Variant report

Variant	rs7670389
Chromosome Location	chr4:79441725-79441726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6817436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6835840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6844021	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7660922	1.00[AMR][1000 genomes]
rs7675997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1795666	chr4:79436927-79443850	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79363400-79455200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:79363800-79464200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79378600-79455800	Weak transcription	Right Ventricle	heart
4	chr4:79385000-79467400	Weak transcription	Fetal Brain Male	brain
5	chr4:79393800-79467200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:79401000-79467200	Weak transcription	Psoas Muscle	Psoas
7	chr4:79403200-79449800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:79404200-79450200	Weak transcription	HMEC	breast
9	chr4:79410200-79443600	Weak transcription	HSMMtube	muscle
10	chr4:79410200-79461800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:79420400-79445000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:79421800-79445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:79426800-79455000	Weak transcription	Esophagus	oesophagus
14	chr4:79428200-79466200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:79428600-79449800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:79428600-79459000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:79430200-79456000	Weak transcription	Aorta	Aorta
18	chr4:79430200-79456000	Weak transcription	Pancreas	Pancrea
19	chr4:79430600-79451400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:79430800-79454600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:79432200-79448600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:79435400-79443600	Weak transcription	Fetal Intestine Large	intestine
23	chr4:79435400-79447200	Weak transcription	Fetal Kidney	kidney
24	chr4:79435600-79455600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr4:79435600-79463000	Weak transcription	Fetal Heart	heart
26	chr4:79435600-79467200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:79437200-79446800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:79437600-79442400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:79437600-79442600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr4:79439800-79444000	Strong transcription	HepG2	liver
31	chr4:79439800-79450200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr4:79440000-79441800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:79440000-79451000	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr4:79440200-79443200	Weak transcription	Fetal Lung	lung
35	chr4:79440200-79446000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr4:79440200-79448600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr4:79440200-79448800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:79440600-79465800	Weak transcription	Lung	lung
39	chr4:79440600-79467200	Weak transcription	Left Ventricle	heart
40	chr4:79440800-79456200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr4:79441200-79442400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:79441400-79442400	Enhancers	Fetal Stomach	stomach
43	chr4:79441400-79443600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:79441400-79446200	Weak transcription	Fetal Intestine Small	intestine
45	chr4:79441600-79441800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:79441600-79447000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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