Variant report

Variant	rs7671550
Chromosome Location	chr4:27746623-27746624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10939174	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12171362	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12171363	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12171364	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1354330	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2047847	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28683711	0.88[ASN][1000 genomes]
rs4254755	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4311297	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4311298	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4478175	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4541490	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4645205	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6448537	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7677623	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7686953	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv878770	chr4:27680483-27844411	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012113	chr4:27694978-27819838	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv537057	chr4:27694978-27819838	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27746600-27747000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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