Variant report

Variant	rs7671557
Chromosome Location	chr4:88243252-88243253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11097131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097147	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721653	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11726120	0.83[AMR][1000 genomes]
rs11726577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734257	1.00[CHB][hapmap]
rs11734330	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737402	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11930147	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11930151	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939415	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946007	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505484	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923434	1.00[CHB][hapmap]
rs55764266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55789502	0.82[AMR][1000 genomes]
rs55895035	0.84[EUR][1000 genomes]
rs55932175	0.84[EUR][1000 genomes]
rs56083423	0.85[AMR][1000 genomes]
rs56141705	0.84[EUR][1000 genomes]
rs56258452	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56284919	0.84[EUR][1000 genomes]
rs56385009	0.82[EUR][1000 genomes]
rs56390566	0.85[EUR][1000 genomes]
rs56788263	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58360495	0.84[EUR][1000 genomes]
rs60597105	0.85[EUR][1000 genomes]
rs62305681	0.83[AMR][1000 genomes]
rs62305686	0.82[AMR][1000 genomes]
rs62305688	0.85[AMR][1000 genomes]
rs62305693	0.85[AMR][1000 genomes]
rs62305719	0.82[AMR][1000 genomes]
rs62305721	0.82[AMR][1000 genomes]
rs62305726	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305728	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305729	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62305730	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305731	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305732	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305753	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319084	0.85[EUR][1000 genomes]
rs72652029	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72670130	0.85[AMR][1000 genomes]
rs72670132	0.82[AMR][1000 genomes]
rs72670133	0.85[AMR][1000 genomes]
rs7436142	0.82[AMR][1000 genomes]
rs7664717	0.81[EUR][1000 genomes]
rs7665549	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7667669	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs7668684	1.00[CHB][hapmap]
rs7674658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690170	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870296	chr4:88173534-88295927	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv879527	chr4:88194170-88250203	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1802846	chr4:88211056-88246450	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv4412	chr4:88237813-88283368	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88229000-88245000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:88235200-88243800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:88238600-88253400	Weak transcription	HepG2	liver
4	chr4:88239400-88248000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:88239400-88255400	Weak transcription	A549	lung
6	chr4:88241000-88244200	Active TSS	Liver	Liver
7	chr4:88242600-88244200	Active TSS	Adipose Nuclei	Adipose
8	chr4:88243200-88243600	Active TSS	Ovary	ovary
9	chr4:88243200-88243600	Enhancers	NHLF	lung
10	chr4:88243200-88244000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:88243200-88244200	Active TSS	Pancreatic Islets	Pancreatic Islet

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