Variant report

Variant	rs767193
Chromosome Location	chr4:119762953-119762954
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119755737..119758687-chr4:119762494..119764022,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150961	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10014331	0.95[ASN][1000 genomes]
rs10019751	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11730732	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11944285	0.89[ASN][1000 genomes]
rs2052769	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28469651	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28706123	0.92[ASN][1000 genomes]
rs28783784	0.90[ASN][1000 genomes]
rs6848274	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9884928	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs992463	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3376985	chr4:119757182-119774736	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119758000-119764600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:119758000-119764600	Weak transcription	Psoas Muscle	Psoas
3	chr4:119758200-119766800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:119758200-119771200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:119758400-119763000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:119758400-119763000	Weak transcription	NHLF	lung
7	chr4:119758600-119763400	Weak transcription	NHEK	skin
8	chr4:119761200-119763200	Weak transcription	HSMMtube	muscle
9	chr4:119762200-119764000	Enhancers	Osteobl	bone
10	chr4:119762200-119764800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:119762200-119764800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:119762400-119763000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:119762400-119763000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:119762400-119763200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:119762400-119763200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:119762600-119763000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr4:119762600-119763000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:119762600-119763000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr4:119762600-119763200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:119762600-119763400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:119762600-119763800	Flanking Active TSS	NH-A	brain
22	chr4:119762600-119764000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:119762600-119764000	Enhancers	HUVEC	blood vessel
24	chr4:119762600-119764400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:119762800-119763800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:119762800-119764000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:119762800-119764000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:119762800-119764000	Enhancers	HMEC	breast
29	chr4:119762800-119764000	Enhancers	HSMM	muscle
30	chr4:119762800-119764000	Enhancers	NHDF-Ad	bronchial
31	chr4:119762800-119771400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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