Variant report

Variant	rs7672246
Chromosome Location	chr4:128273676-128273677
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17012372	0.96[AFR][1000 genomes]
rs1811451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2019630	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849534	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7672294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs920737	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128273000-128274400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:128273400-128274000	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr4:128273400-128274200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:128273400-128274200	Enhancers	Aorta	Aorta
5	chr4:128273400-128274200	Enhancers	Fetal Muscle Leg	muscle
6	chr4:128273400-128274200	Enhancers	Ovary	ovary
7	chr4:128273400-128274200	Enhancers	Rectal Smooth Muscle	rectum
8	chr4:128273400-128274200	Enhancers	Stomach Smooth Muscle	stomach
9	chr4:128273400-128274400	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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