Variant report

Variant	rs7672780
Chromosome Location	chr4:92295468-92295469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10022644	0.82[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap]
rs10516891	0.86[CEU][hapmap];0.82[CHB][hapmap];0.82[TSI][hapmap]
rs10856885	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs12640578	0.82[CHB][hapmap]
rs12644183	0.82[CHB][hapmap]
rs12648320	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs13123650	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs1358554	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs1406316	0.84[MEX][hapmap]
rs1528579	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1554850	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1919225	0.82[CHB][hapmap]
rs2091765	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2178221	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs28409340	0.85[EUR][1000 genomes]
rs2904382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs4301075	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6532293	0.84[MEX][hapmap]
rs6532301	0.89[MEX][hapmap]
rs6532304	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532305	0.92[JPT][hapmap]
rs6820807	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6833290	0.84[MEX][hapmap]
rs6837304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837355	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs6844256	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6851704	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7654013	0.81[CHB][hapmap]
rs7668527	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs7672281	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3384271	chr4:92073391-92464275	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv879566	chr4:92215966-92322333	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879567	chr4:92215966-92413671	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1830673	chr4:92241587-92379081	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879568	chr4:92244300-92429961	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv461584	chr4:92280933-92344220	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv594856	chr4:92280933-92344220	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv879569	chr4:92281419-92352498	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv879570	chr4:92281419-92368346	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv879571	chr4:92281419-92483806	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv879572	chr4:92281419-92510827	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv879573	chr4:92281419-92520419	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv518645	chr4:92286605-92422256	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7672780	SMARCAD1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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