Variant report

Variant	rs7673060
Chromosome Location	chr4:111195187-111195188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10022428	1.00[EUR][1000 genomes]
rs11941311	1.00[MEX][hapmap]
rs11947429	1.00[EUR][1000 genomes]
rs17041465	1.00[EUR][1000 genomes]
rs28493020	0.82[AFR][1000 genomes]
rs4698822	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59211928	1.00[ASN][1000 genomes]
rs6820750	1.00[MEX][hapmap]
rs72900599	1.00[EUR][1000 genomes]
rs72900602	1.00[EUR][1000 genomes]
rs7694909	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111192600-111197000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:111192800-111196400	Weak transcription	NH-A	brain
3	chr4:111192800-111196800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:111193400-111196800	Weak transcription	Osteobl	bone
5	chr4:111193400-111197000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:111193400-111197000	Weak transcription	HSMM	muscle
7	chr4:111193800-111197000	Weak transcription	HSMMtube	muscle
8	chr4:111194800-111195200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:111194800-111196400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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