Variant report

Variant	rs767364
Chromosome Location	chr9:79030277-79030278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr9:79030041-79030358	HepG2	liver:	n/a	n/a
2	FOS	chr9:79029506-79030918	HUVEC	blood vessel:	n/a	chr9:79030251-79030262 chr9:79030647-79030659
3	FOS	chr9:79029606-79030446	MCF10A-Er-Src	breast:	n/a	chr9:79030251-79030262
4	JUN	chr9:79030093-79030981	HUVEC	blood vessel:	n/a	chr9:79030647-79030659
5	FOS	chr9:79030088-79030424	MCF10A-Er-Src	breast:	n/a	chr9:79030251-79030262
6	STAT3	chr9:79030218-79030418	MCF10A-Er-Src	breast:	n/a	n/a
7	JUND	chr9:79030095-79030351	HepG2	liver:	n/a	chr9:79030251-79030262
8	FOS	chr9:79030097-79030399	MCF10A-Er-Src	breast:	n/a	chr9:79030251-79030262
9	FOS	chr9:79029609-79030990	MCF10A-Er-Src	breast:	n/a	chr9:79030251-79030262 chr9:79030647-79030659
10	JUND	chr9:79030108-79030372	K562	blood:	n/a	chr9:79030251-79030262

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79008306..79010986-chr9:79027857..79030537,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233814	TF binding region
GCNT1	TF binding region
ENSG00000135002	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13439991	1.00[ASN][1000 genomes]
rs1575554	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062606	1.00[MEX][hapmap]
rs2247444	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2247805	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2247914	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2490578	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2490580	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2490581	0.90[EUR][1000 genomes]
rs2490585	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490587	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501921	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2501924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2501926	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2501931	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2501936	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3739517	1.00[MEX][hapmap]
rs587766	1.00[CEU][hapmap]
rs615928	0.81[TSI][hapmap]
rs7033581	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036849	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv3451027	chr9:79021447-79056132	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79029000-79031600	Enhancers	HUVEC	blood vessel
2	chr9:79029200-79031200	Enhancers	NH-A	brain
3	chr9:79029200-79031400	Enhancers	Hela-S3	cervix
4	chr9:79029600-79030400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:79029600-79031200	Enhancers	Osteobl	bone
6	chr9:79029600-79031400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:79029600-79031600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:79029600-79032800	Enhancers	Stomach Mucosa	stomach
9	chr9:79029800-79030400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:79029800-79031000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:79029800-79031600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:79029800-79031600	Enhancers	Pancreas	Pancrea
13	chr9:79029800-79032600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:79030000-79030400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:79030000-79030600	Enhancers	GM12878-XiMat	blood
16	chr9:79030000-79031200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:79030000-79032200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:79030000-79032600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr9:79030200-79030600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr9:79030200-79030800	Weak transcription	Lung	lung
21	chr9:79030200-79030800	Enhancers	HepG2	liver
22	chr9:79030200-79031200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:79030200-79031200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:79030200-79031400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:79030200-79031600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:79030200-79032000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links