Variant report

Variant	rs7674452
Chromosome Location	chr4:88160782-88160783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87866844..87868969-chr4:88158554..88161014,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11723697	0.86[ASN][1000 genomes]
rs11724713	0.86[ASN][1000 genomes]
rs11726120	0.86[ASN][1000 genomes]
rs11731978	0.86[ASN][1000 genomes]
rs11732868	0.86[ASN][1000 genomes]
rs11734257	0.86[ASN][1000 genomes]
rs3923434	0.85[MEX][hapmap];0.86[ASN][1000 genomes]
rs55789502	0.86[ASN][1000 genomes]
rs55947321	0.86[ASN][1000 genomes]
rs56070439	0.86[ASN][1000 genomes]
rs56083423	0.86[ASN][1000 genomes]
rs56285151	0.86[ASN][1000 genomes]
rs62305677	0.86[ASN][1000 genomes]
rs62305678	0.86[ASN][1000 genomes]
rs62305681	0.86[ASN][1000 genomes]
rs62305682	0.86[ASN][1000 genomes]
rs62305683	0.86[ASN][1000 genomes]
rs62305684	0.86[ASN][1000 genomes]
rs62305685	0.86[ASN][1000 genomes]
rs62305686	0.86[ASN][1000 genomes]
rs62305687	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305688	0.86[ASN][1000 genomes]
rs62305693	0.86[ASN][1000 genomes]
rs62305694	0.86[ASN][1000 genomes]
rs62305717	0.86[ASN][1000 genomes]
rs62305718	0.86[ASN][1000 genomes]
rs62305719	0.86[ASN][1000 genomes]
rs62305720	0.86[ASN][1000 genomes]
rs62305721	0.86[ASN][1000 genomes]
rs62305722	0.86[ASN][1000 genomes]
rs62308868	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308869	0.86[ASN][1000 genomes]
rs62308871	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531973	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6840032	0.86[ASN][1000 genomes]
rs72670112	0.86[ASN][1000 genomes]
rs72670120	0.86[ASN][1000 genomes]
rs72670130	0.86[ASN][1000 genomes]
rs72670132	0.86[ASN][1000 genomes]
rs72670133	0.86[ASN][1000 genomes]
rs7436142	0.86[ASN][1000 genomes]
rs7659993	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7667669	0.86[ASN][1000 genomes]
rs7668684	0.81[CEU][hapmap];0.85[MEX][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1007020	chr4:88046263-88235018	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537169	chr4:88046263-88235018	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1014846	chr4:88151614-88188335	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv537170	chr4:88151614-88188335	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88157400-88161000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:88157400-88161200	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:88157400-88161200	Weak transcription	Fetal Kidney	kidney
4	chr4:88157400-88161200	Weak transcription	Fetal Lung	lung
5	chr4:88157400-88161200	Weak transcription	HSMMtube	muscle
6	chr4:88157400-88161400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:88157600-88161000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:88157600-88161000	Weak transcription	Fetal Intestine Large	intestine
9	chr4:88157600-88161200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:88157600-88161200	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:88157600-88161200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:88157600-88161200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:88157600-88161200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:88157800-88161200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:88157800-88161200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:88157800-88161200	Weak transcription	Liver	Liver
17	chr4:88157800-88161200	Weak transcription	Stomach Mucosa	stomach
18	chr4:88157800-88161400	Weak transcription	Adipose Nuclei	Adipose
19	chr4:88158400-88161200	Weak transcription	HepG2	liver
20	chr4:88160200-88161600	Active TSS	A549	lung
21	chr4:88160400-88161800	Enhancers	Osteobl	bone
22	chr4:88160400-88162800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:88160600-88160800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:88160600-88161200	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr4:88160600-88161600	Enhancers	Fetal Intestine Small	intestine
26	chr4:88160600-88161800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:88160600-88161800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:88160600-88161800	Enhancers	Muscle Satellite Cultured Cells	--

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