The 2.0 version of rSNPBase

Variant report

Variant rs767456
Chromosome Location chr5:16539604-16539605
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16516000-16540800 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr5:16522400-16567400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr5:16523400-16540800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr5:16523800-16540800 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr5:16525000-16540800 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr5:16525000-16542000 Weak transcription Primary T regulatory cells fromperipheralblood blood
7 chr5:16525200-16540400 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr5:16532200-16542000 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr5:16533200-16543200 Enhancers Fetal Heart heart
10 chr5:16534200-16541800 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr5:16534400-16540200 Enhancers Fetal Muscle Leg muscle
12 chr5:16534400-16541200 Enhancers Brain Inferior Temporal Lobe brain
13 chr5:16535400-16539800 Enhancers Fetal Muscle Trunk muscle
14 chr5:16535400-16543400 Enhancers Brain Cingulate Gyrus brain
15 chr5:16535600-16541200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
16 chr5:16535600-16546000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr5:16536200-16541200 Enhancers Brain Angular Gyrus brain
18 chr5:16536400-16541200 Enhancers Brain Hippocampus Middle brain
19 chr5:16536400-16541400 Enhancers Brain Anterior Caudate brain
20 chr5:16536800-16541200 Enhancers Brain Substantia Nigra brain
21 chr5:16536800-16552800 Weak transcription Thymus Thymus
22 chr5:16537600-16542200 Weak transcription Primary T cells fromperipheralblood blood
23 chr5:16537800-16539800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr5:16537800-16539800 Enhancers Placenta Placenta
25 chr5:16538000-16539800 Enhancers Rectal Mucosa Donor 29 rectum
26 chr5:16538200-16540400 Enhancers Fetal Intestine Large intestine
27 chr5:16538200-16540600 Weak transcription Primary T cells from cord blood blood
28 chr5:16538200-16540600 Enhancers Fetal Intestine Small intestine
29 chr5:16538200-16541200 Enhancers HSMM muscle
30 chr5:16538200-16541200 Enhancers HSMMtube muscle
31 chr5:16538400-16540400 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr5:16538400-16540600 Enhancers Duodenum Mucosa Duodenum
33 chr5:16538400-16541400 Enhancers Muscle Satellite Cultured Cells --
34 chr5:16538400-16542200 Weak transcription Colonic Mucosa Colon
35 chr5:16538600-16540400 Enhancers NHDF-Ad bronchial
36 chr5:16538600-16540600 Enhancers Adipose Nuclei Adipose
37 chr5:16538600-16546400 Weak transcription Right Ventricle heart
38 chr5:16539000-16539800 Enhancers Fetal Adrenal Gland Adrenal Gland
39 chr5:16539000-16539800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
40 chr5:16539000-16539800 Flanking Active TSS Hela-S3 cervix
41 chr5:16539000-16541000 Enhancers Liver Liver
42 chr5:16539000-16541000 Enhancers NHLF lung
43 chr5:16539000-16541200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr5:16539000-16541200 Enhancers NH-A brain
45 chr5:16539000-16541200 Enhancers Osteobl bone
46 chr5:16539000-16541400 Enhancers HMEC breast
47 chr5:16539200-16539800 Enhancers Aorta Aorta
48 chr5:16539200-16539800 Enhancers Esophagus oesophagus
49 chr5:16539200-16539800 Enhancers Gastric stomach
50 chr5:16539200-16539800 Enhancers Pancreas Pancrea

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Last update: Aug 31, 2015