Variant report

Variant	rs7674642
Chromosome Location	chr4:147403206-147403207
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11937099	1.00[AMR][1000 genomes]
rs11939693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943145	1.00[AMR][1000 genomes]
rs11947477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1033640	chr4:147232217-147531881	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv917053	chr4:147265436-147499653	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023868	chr4:147265443-147531626	Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv537293	chr4:147265443-147531626	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv428453	chr4:147335953-147457115	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147380200-147403800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr4:147389000-147404200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:147389200-147416200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:147389200-147416400	Weak transcription	NHEK	skin
5	chr4:147389400-147403600	Weak transcription	Primary B cells from cord blood	blood
6	chr4:147389400-147407800	Weak transcription	Small Intestine	intestine
7	chr4:147394000-147405200	Weak transcription	Esophagus	oesophagus
8	chr4:147398800-147404600	Weak transcription	NH-A	brain
9	chr4:147399400-147405200	Weak transcription	Left Ventricle	heart
10	chr4:147399800-147416400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:147400600-147403800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:147401600-147403800	Weak transcription	Right Ventricle	heart
13	chr4:147402000-147406800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:147402000-147407400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr4:147402000-147409000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:147402200-147404200	ZNF genes & repeats	GM12878-XiMat	blood
17	chr4:147402400-147404000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr4:147402600-147403800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr4:147402600-147404000	ZNF genes & repeats	Brain Germinal Matrix	brain
20	chr4:147402600-147404600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr4:147402600-147405000	Weak transcription	Aorta	Aorta
22	chr4:147402600-147405600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr4:147402600-147415400	Weak transcription	Gastric	stomach
24	chr4:147402800-147405200	Weak transcription	Fetal Stomach	stomach
25	chr4:147403000-147403400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:147403000-147404400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:147403000-147404400	Weak transcription	Thymus	Thymus
28	chr4:147403000-147405200	Weak transcription	Pancreas	Pancrea
29	chr4:147403000-147405400	ZNF genes & repeats	Primary T cells from cord blood	blood
30	chr4:147403000-147409000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:147403000-147415400	Weak transcription	Ovary	ovary
32	chr4:147403000-147422200	Weak transcription	Placenta	Placenta
33	chr4:147403000-147436200	Weak transcription	Lung	lung
34	chr4:147403200-147403400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:147403200-147403400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:147403200-147403800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:147403200-147405400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:147403200-147409800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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