Variant report

Variant	rs7674906
Chromosome Location	chr4:47292665-47292666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4561904	0.96[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7440984	0.96[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7660843	0.87[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs9996565	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9996854	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879004	chr4:47234200-47322190	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47281600-47296400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:47292000-47292800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:47292200-47292800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:47292600-47293400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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