Variant report

Variant	rs7675477
Chromosome Location	chr4:20995935-20995936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10516368	1.00[JPT][hapmap]
rs10516372	1.00[JPT][hapmap]
rs10516373	1.00[JPT][hapmap]
rs10938820	1.00[JPT][hapmap]
rs11735132	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11737267	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs11931507	1.00[JPT][hapmap]
rs11946257	1.00[JPT][hapmap]
rs12639782	1.00[JPT][hapmap]
rs12640610	0.81[CEU][hapmap];0.88[CHB][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12642219	1.00[JPT][hapmap]
rs12643593	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645600	1.00[JPT][hapmap]
rs12647136	1.00[JPT][hapmap]
rs12647761	1.00[JPT][hapmap]
rs12648562	1.00[JPT][hapmap]
rs12649754	1.00[JPT][hapmap]
rs12650301	1.00[JPT][hapmap]
rs12650955	1.00[JPT][hapmap]
rs13143622	1.00[JPT][hapmap]
rs1434954	1.00[JPT][hapmap]
rs1434955	1.00[JPT][hapmap]
rs1491371	1.00[JPT][hapmap]
rs16870186	1.00[JPT][hapmap]
rs16870225	1.00[JPT][hapmap]
rs16870226	1.00[JPT][hapmap]
rs16870239	1.00[JPT][hapmap]
rs16870246	1.00[JPT][hapmap]
rs1988092	1.00[JPT][hapmap]
rs41389548	1.00[JPT][hapmap]
rs4235287	1.00[JPT][hapmap]
rs4499695	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56271214	0.92[AMR][1000 genomes]
rs6834010	1.00[JPT][hapmap]
rs6834492	1.00[JPT][hapmap]
rs6836818	1.00[JPT][hapmap]
rs6856054	1.00[JPT][hapmap]
rs7340882	1.00[JPT][hapmap]
rs7660907	1.00[JPT][hapmap]
rs7676308	1.00[JPT][hapmap]
rs7676475	1.00[JPT][hapmap]
rs7678620	1.00[JPT][hapmap]
rs920019	1.00[CHB][hapmap]
rs971472	0.83[MEX][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20988800-21004600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:20993600-20997400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:20994400-20998400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:20995800-20996400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links