Variant report

Variant	rs7675504
Chromosome Location	chr4:22559553-22559554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10005079	1.00[AMR][1000 genomes]
rs10026609	1.00[AMR][1000 genomes]
rs10027323	1.00[AMR][1000 genomes]
rs11935750	1.00[AMR][1000 genomes]
rs28396160	1.00[AMR][1000 genomes]
rs28411920	1.00[AMR][1000 genomes]
rs28509327	1.00[AMR][1000 genomes]
rs28634696	1.00[AMR][1000 genomes]
rs28662481	1.00[AMR][1000 genomes]
rs28668941	1.00[AMR][1000 genomes]
rs28876451	1.00[AMR][1000 genomes]
rs60067648	1.00[AMR][1000 genomes]
rs73113403	1.00[AMR][1000 genomes]
rs9997307	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22558200-22559600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:22559000-22560000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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