Variant report

Variant	rs7675793
Chromosome Location	chr4:104077680-104077681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:104073139..104075299-chr4:104076161..104078767,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17033437	1.00[EUR][1000 genomes]
rs2866639	1.00[EUR][1000 genomes]
rs6812632	1.00[EUR][1000 genomes]
rs6813792	1.00[EUR][1000 genomes]
rs6831995	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6834354	1.00[EUR][1000 genomes]
rs6834690	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6839962	1.00[EUR][1000 genomes]
rs6843807	1.00[EUR][1000 genomes]
rs6850183	1.00[EUR][1000 genomes]
rs6851455	1.00[EUR][1000 genomes]
rs6853449	1.00[EUR][1000 genomes]
rs72935593	1.00[EUR][1000 genomes]
rs72937427	1.00[EUR][1000 genomes]
rs72937428	1.00[EUR][1000 genomes]
rs72937431	1.00[EUR][1000 genomes]
rs72937478	1.00[EUR][1000 genomes]
rs9684904	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429917	chr4:103915319-104207455	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830021	chr4:103934454-104100588	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1015023	chr4:104039145-104565217	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:104021000-104089600	Weak transcription	Fetal Heart	heart
2	chr4:104021200-104100200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:104029000-104089000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:104029800-104089000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:104030200-104089600	Weak transcription	Hela-S3	cervix
6	chr4:104038200-104095800	Strong transcription	Fetal Thymus	thymus
7	chr4:104049600-104078200	Weak transcription	Brain Germinal Matrix	brain
8	chr4:104050600-104085400	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:104051000-104089200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:104051000-104092600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:104051400-104089400	Weak transcription	Placenta	Placenta
12	chr4:104051600-104088800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:104052000-104089200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:104052600-104088800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:104055600-104089200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:104056800-104080000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:104058200-104118400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:104058800-104079400	Weak transcription	Primary T cells from cord blood	blood
19	chr4:104059400-104087400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:104059400-104089000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:104062800-104079400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:104064200-104089000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:104065000-104113200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:104065600-104088800	Weak transcription	Thymus	Thymus
25	chr4:104070000-104080200	Weak transcription	NH-A	brain
26	chr4:104070200-104088800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:104070400-104091200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr4:104071000-104089000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr4:104071200-104088800	Weak transcription	Fetal Intestine Large	intestine
30	chr4:104071600-104078400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:104071800-104088800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:104072000-104088800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:104072200-104088800	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:104072600-104089200	Weak transcription	NHLF	lung
35	chr4:104072600-104089400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:104073000-104079800	Weak transcription	Osteobl	bone
37	chr4:104073200-104078400	Weak transcription	HMEC	breast
38	chr4:104073600-104079400	Weak transcription	NHEK	skin
39	chr4:104073600-104118400	Weak transcription	Fetal Kidney	kidney
40	chr4:104074000-104085000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:104074800-104088800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:104075600-104080200	Strong transcription	A549	lung
43	chr4:104075800-104078800	Strong transcription	HSMM	muscle
44	chr4:104075800-104083400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:104076000-104078800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:104076000-104078800	Strong transcription	Fetal Muscle Trunk	muscle
47	chr4:104076000-104080200	Strong transcription	Primary hematopoietic stem cells	blood
48	chr4:104076000-104084800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr4:104076000-104085600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr4:104076200-104077800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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