Variant report

Variant	rs7675896
Chromosome Location	chr4:99583639-99583640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr4:99583564-99584356	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99582924..99584732-chr4:99590300..99592212,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAP1GDS1-3	chr4:99580055-99585701	ENSG00000260641.1
2	lnc-RAP1GDS1-3	chr4:99580055-99585702	NONHSAT097492

Variant related genes	Relation type
TSPAN5	TF binding region

rs_ID	r²[population]
rs12503720	0.89[ASN][1000 genomes]
rs12507328	0.80[CHB][hapmap]
rs12512460	0.86[YRI][hapmap];0.87[AFR][1000 genomes]

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99580400-99583800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:99580400-99584000	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr4:99580600-99583800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:99580600-99583800	Weak transcription	Thymus	Thymus
5	chr4:99580600-99584000	Weak transcription	Spleen	Spleen
6	chr4:99580600-99584400	Weak transcription	Adipose Nuclei	Adipose
7	chr4:99580600-99585200	Enhancers	Fetal Lung	lung
8	chr4:99580800-99583800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:99580800-99583800	Enhancers	Primary T cells from cord blood	blood
10	chr4:99580800-99583800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:99580800-99583800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:99580800-99584000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:99580800-99584000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:99580800-99584000	Weak transcription	Lung	lung
15	chr4:99580800-99584200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:99580800-99585200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:99581000-99584000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:99581000-99585800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:99581200-99584000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr4:99581200-99584000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:99581200-99584000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:99581200-99584000	Weak transcription	Gastric	stomach
23	chr4:99581200-99584200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:99581200-99584200	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:99581200-99584200	Weak transcription	Fetal Muscle Leg	muscle
26	chr4:99581200-99584600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:99581400-99583800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr4:99581400-99583800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr4:99581400-99584000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:99581400-99584000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:99581400-99584000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:99581400-99584000	Weak transcription	Esophagus	oesophagus
33	chr4:99581400-99584000	Weak transcription	Pancreas	Pancrea
34	chr4:99581400-99584200	Weak transcription	Placenta	Placenta
35	chr4:99581400-99584200	Weak transcription	Left Ventricle	heart
36	chr4:99581400-99584400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr4:99581400-99585200	Enhancers	Stomach Mucosa	stomach
38	chr4:99581400-99586000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr4:99581600-99583800	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr4:99581600-99583800	Weak transcription	Brain Substantia Nigra	brain
41	chr4:99582000-99584200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr4:99582000-99584400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:99582400-99584000	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr4:99582600-99584200	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr4:99582600-99585200	Enhancers	H1 Cell Line	embryonic stem cell
46	chr4:99582600-99585200	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr4:99582600-99585200	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr4:99582600-99585200	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr4:99582800-99584000	Enhancers	Primary T cells fromperipheralblood	blood
50	chr4:99582800-99584200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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