Variant report

Variant	rs7676083
Chromosome Location	chr4:79047059-79047060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12504233	0.81[EUR][1000 genomes]
rs12512411	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4458476	0.92[ASN][1000 genomes]
rs4543141	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6845871	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv520625	chr4:79002655-79071788	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79039800-79047600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:79042400-79047200	Weak transcription	Right Atrium	heart
3	chr4:79042600-79052800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:79042800-79052600	Weak transcription	Left Ventricle	heart
5	chr4:79043000-79047200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:79043000-79052600	Weak transcription	Psoas Muscle	Psoas
7	chr4:79046600-79047600	Enhancers	HepG2	liver
8	chr4:79046800-79047200	Enhancers	Right Ventricle	heart
9	chr4:79046800-79047400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:79046800-79047400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:79046800-79047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:79046800-79047400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:79046800-79047400	Enhancers	Fetal Intestine Large	intestine
14	chr4:79046800-79047400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr4:79046800-79047600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:79046800-79047600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr4:79046800-79047600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:79046800-79047600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:79046800-79047600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:79046800-79047600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:79046800-79047600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr4:79046800-79047600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:79046800-79047600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:79046800-79047600	Enhancers	Fetal Heart	heart
25	chr4:79046800-79047600	Enhancers	Placenta	Placenta
26	chr4:79046800-79047600	Enhancers	Pancreas	Pancrea
27	chr4:79046800-79047800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr4:79047000-79048000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:79047000-79050800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links