Variant report

Variant	rs7676210
Chromosome Location	chr4:91889469-91889470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10014892	1.00[JPT][hapmap]
rs10516881	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10516887	1.00[JPT][hapmap]
rs12510185	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12511192	0.81[MEX][hapmap]
rs17198799	0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap]
rs28421571	0.83[ASN][1000 genomes]
rs28461191	0.83[ASN][1000 genomes]
rs28492836	0.88[ASN][1000 genomes]
rs6823119	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7672960	0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3465710	chr4:91885414-91899837	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3465709	chr4:91885428-91899847	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3465706	chr4:91885446-91899808	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3465707	chr4:91885448-91899788	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3465711	chr4:91885448-91899788	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv20409	chr4:91885542-91899572	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2760868	chr4:91886208-91899070	Inactive region	Chromatin interactive region	n/a	n/a	diseases
11	esv3692829	chr4:91888883-91898065	Inactive region	Chromatin interactive region	n/a	n/a	diseases
12	nsv818251	chr4:91888883-91898065	Inactive region	Chromatin interactive region	n/a	n/a	diseases
13	nsv516428	chr4:91888883-91902620	Inactive region	Chromatin interactive region	n/a	n/a	diseases
14	nsv998409	chr4:91888883-91915429	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv879556	chr4:91889469-91941029	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7676210	ATOH1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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