Variant report

Variant	rs7677115
Chromosome Location	chr4:103095300-103095301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60836428	0.86[EUR][1000 genomes]
rs6837052	1.00[AFR][1000 genomes]
rs72929951	0.86[EUR][1000 genomes]
rs72931988	0.86[EUR][1000 genomes]
rs72931991	0.86[EUR][1000 genomes]
rs72933910	0.86[EUR][1000 genomes]
rs72933934	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103087600-103095800	Weak transcription	Aorta	Aorta
2	chr4:103090200-103095600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:103090800-103095600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:103090800-103095600	Weak transcription	NH-A	brain
5	chr4:103091200-103095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:103091200-103095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:103091200-103096000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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