Variant report

Variant	rs7677740
Chromosome Location	chr4:3360157-3360158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:3356602..3361196-chr4:3388835..3391854,4	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11930854	1.00[EUR][1000 genomes]
rs16844136	1.00[EUR][1000 genomes]
rs16844192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844195	1.00[EUR][1000 genomes]
rs16844204	1.00[EUR][1000 genomes]
rs16844219	1.00[EUR][1000 genomes]
rs16844223	1.00[EUR][1000 genomes]
rs16844394	1.00[EUR][1000 genomes]
rs16844398	1.00[EUR][1000 genomes]
rs6814892	1.00[EUR][1000 genomes]
rs6855975	1.00[EUR][1000 genomes]
rs7657430	1.00[EUR][1000 genomes]
rs7663472	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7664128	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7673434	1.00[EUR][1000 genomes]
rs7681258	1.00[EUR][1000 genomes]
rs7687090	1.00[EUR][1000 genomes]
rs7691619	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv878456	chr4:3215835-3467519	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv428106	chr4:3226182-3752322	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv878462	chr4:3311548-3505448	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1007847	chr4:3317904-3527357	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv537001	chr4:3317904-3527357	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv3373442	chr4:3359579-3362527	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3427123	chr4:3359854-3362252	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3334000-3370600	Weak transcription	Right Atrium	heart
2	chr4:3344400-3362400	Weak transcription	HSMMtube	muscle
3	chr4:3344400-3367600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:3346600-3363800	Weak transcription	Fetal Brain Female	brain
5	chr4:3346600-3364600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:3347400-3360800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:3347400-3364800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:3348200-3367400	Weak transcription	Fetal Heart	heart
9	chr4:3348400-3360600	Weak transcription	HSMM	muscle
10	chr4:3348400-3367600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:3350400-3364000	Weak transcription	Spleen	Spleen
12	chr4:3350800-3364200	Weak transcription	Pancreas	Pancrea
13	chr4:3350800-3367600	Weak transcription	Ovary	ovary
14	chr4:3352400-3363200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:3354200-3363800	Weak transcription	Brain Germinal Matrix	brain
16	chr4:3354600-3364600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:3354800-3368200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:3355000-3367800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:3355200-3368400	Weak transcription	Fetal Intestine Small	intestine
20	chr4:3356000-3361600	Weak transcription	Lung	lung
21	chr4:3356000-3365000	Weak transcription	Fetal Stomach	stomach
22	chr4:3356600-3364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:3356600-3368000	Weak transcription	Fetal Intestine Large	intestine
24	chr4:3357600-3361200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr4:3358200-3367800	Weak transcription	HepG2	liver
26	chr4:3358800-3369000	Weak transcription	Fetal Lung	lung
27	chr4:3359400-3360600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr4:3359800-3360200	Enhancers	Liver	Liver
29	chr4:3359800-3361400	Enhancers	HUVEC	blood vessel
30	chr4:3360000-3360400	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr4:3360000-3360400	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr4:3360000-3360600	Enhancers	A549	lung
33	chr4:3360000-3360600	Enhancers	Monocytes-CD14+_RO01746	blood

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