Variant report

Variant	rs76782714
Chromosome Location	chr17:45249335-45249336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:172)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:172 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELK1	chr17:45249114-45249529	GM12878	blood:	n/a	n/a
2	ELK1	chr17:45249119-45249518	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr17:45249220-45249370	NHLF	lung:	n/a	n/a
4	MYC	chr17:45249097-45249497	MCF-7	breast:	n/a	n/a
5	CTCF	chr17:45249200-45249350	GM06990	blood:	n/a	n/a
6	CTCF	chr17:45249200-45249350	AG09309	skin:	n/a	n/a
7	CTCF	chr17:45249295-45249380	Kidney_OC	kidney:	n/a	n/a
8	CTCF	chr17:45249252-45249445	GM10248	blood:	n/a	n/a
9	STAT3	chr17:45249126-45249515	MCF10A-Er-Src	breast:	n/a	chr17:45249215-45249223
10	CTCF	chr17:45249220-45249370	HCT-116	colon:	n/a	n/a
11	POLR2A	chr17:45249147-45249527	MCF10A-Er-Src	breast:	n/a	n/a
12	CTCF	chr17:45249300-45249450	HRE	kidney:	n/a	n/a
13	BCL3	chr17:45249209-45249491	GM12878	blood:	n/a	n/a
14	NRF1	chr17:45249115-45249529	Hela-S3	cervix:	n/a	n/a
15	CTCF	chr17:45249220-45249370	HCPEpiC	choroid plexus:	n/a	n/a
16	CTCF	chr17:45249187-45249434	MCF-7	breast:	n/a	n/a
17	BRF2	chr17:45249141-45249524	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr17:45249243-45249347	GM19239	blood:	n/a	n/a
19	ZNF384	chr17:45249117-45249516	GM12878	blood:	n/a	n/a
20	CTCF	chr17:45249220-45249370	SK-N-SH_RA	brain:	n/a	n/a
21	CTCF	chr17:45249232-45249433	GM20000	blood:	n/a	n/a
22	SIN3AK20	chr17:45249259-45249388	PFSK-1	brain:	n/a	n/a
23	CTCF	chr17:45249200-45249350	GM12873	blood:	n/a	n/a
24	GTF2F1	chr17:45249146-45249521	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr17:45249212-45249426	ProgFib	skin:	n/a	n/a
26	MYC	chr17:45249233-45249359	HUVEC	blood vessel:	n/a	n/a
27	CTCF	chr17:45249220-45249370	AG09319	gingival:	n/a	n/a
28	SRF	chr17:45249235-45249391	K562	blood:	n/a	n/a
29	PRDM1	chr17:45249129-45249525	Hela-S3	cervix:	n/a	n/a
30	CTCF	chr17:45249200-45249350	WERI-Rb-1	eye:	n/a	n/a
31	IKZF1	chr17:45249128-45249511	GM12878	blood:	n/a	n/a
32	TBP	chr17:45249127-45249530	K562	blood:	n/a	n/a
33	CTCF	chr17:45249260-45249410	HPF	lung:	n/a	n/a
34	IRF3	chr17:45249114-45249534	GM12878	blood:	n/a	n/a
35	SIN3A	chr17:45249127-45249521	GM12878	blood:	n/a	n/a
36	E2F1	chr17:45249140-45249527	Hela-S3	cervix:	n/a	n/a
37	CTCF	chr17:45249220-45249370	HAc	cerebellar:	n/a	n/a
38	CTCF	chr17:45249220-45249370	GM12867	blood:	n/a	n/a
39	CTCF	chr17:45249220-45249370	AG10803	skin:	n/a	n/a
40	CTCF	chr17:45249255-45249406	GM13977	blood:	n/a	n/a
41	CTCF	chr17:45249200-45249350	HRE	kidney:	n/a	n/a
42	CTCF	chr17:45249300-45249450	BJ	skin:	n/a	n/a
43	MAFF	chr17:45249111-45249533	K562	blood:	n/a	n/a
44	RPC155	chr17:45249143-45249524	Hela-S3	cervix:	n/a	n/a
45	CEBPB	chr17:45249109-45249528	K562	blood:	n/a	chr17:45249301-45249312
46	FOS	chr17:45249129-45249519	MCF10A-Er-Src	breast:	n/a	n/a
47	CTCF	chr17:45249220-45249370	BE2_C	brain:	n/a	n/a
48	CTCF	chr17:45249200-45249350	HBMEC	blood vessel:	n/a	n/a
49	TCF12	chr17:45249175-45249435	H1-hESC	embryonic stem cell:	n/a	n/a
50	CTCF	chr17:45249220-45249370	HCM	heart:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45247336..45250133-chr17:45265157..45267526,3	MCF-7	breast:

No data

Variant related genes	Relation type
CDC27	TF binding region
ENSG00000004897	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3393378	chr17:45235569-45249387	Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv5729	chr17:45235587-45249403	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3584	chr17:45246216-45265642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3790	chr17:45247093-45261518	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3344584	chr17:45247298-45258989	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3344853	chr17:45247305-45249388	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3330990	chr17:45247317-45249388	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv6495	chr17:45247369-45249359	ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv6873	chr17:45247370-45266575	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv978432	chr17:45249035-45250065	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3438623	chr17:45249255-45266618	Genic enhancers Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	esv3333194	chr17:45249306-45249495	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3437669	chr17:45249306-45259022	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	esv8330	chr17:45249307-45266621	Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	esv3314728	chr17:45249324-45258982	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
18	esv3314730	chr17:45249324-45258982	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	esv3431737	chr17:45249325-45259054	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45234600-45249400	Strong transcription	A549	lung
2	chr17:45246400-45251600	Weak transcription	Fetal Brain Female	brain
3	chr17:45246600-45251600	Weak transcription	Brain Germinal Matrix	brain
4	chr17:45246800-45251200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr17:45246800-45254400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:45247600-45255400	Strong transcription	HepG2	liver
7	chr17:45248400-45250800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:45249000-45249600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr17:45249200-45249400	Genic enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr17:45249200-45249400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr17:45249200-45249400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:45249200-45249400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr17:45249200-45249400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr17:45249200-45249400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
15	chr17:45249200-45249600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr17:45249200-45249600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
17	chr17:45249200-45249600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr17:45249200-45249600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr17:45249200-45249600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:45249200-45249600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
21	chr17:45249200-45249600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:45249200-45249600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr17:45249200-45249600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr17:45249200-45249600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr17:45249200-45249600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr17:45249200-45249600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
27	chr17:45249200-45249600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr17:45249200-45249600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr17:45249200-45249600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr17:45249200-45249600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
31	chr17:45249200-45249600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
32	chr17:45249200-45249600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
33	chr17:45249200-45249600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr17:45249200-45249600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr17:45249200-45249600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr17:45249200-45249600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr17:45249200-45249600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr17:45249200-45249600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
39	chr17:45249200-45249600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr17:45249200-45249600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
41	chr17:45249200-45249600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
42	chr17:45249200-45249600	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr17:45249200-45249600	ZNF genes & repeats	Primary T cells from cord blood	blood
44	chr17:45249200-45249600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
45	chr17:45249200-45249600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr17:45249200-45249600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
47	chr17:45249200-45249600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
48	chr17:45249200-45249600	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
49	chr17:45249200-45249600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
50	chr17:45249200-45249600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood

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