Variant report

Variant	rs7678798
Chromosome Location	chr4:69762953-69762954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:69730313..69732082-chr4:69762356..69764791,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11249509	0.85[ASN][1000 genomes]
rs11725828	0.87[ASN][1000 genomes]
rs11726322	0.81[EUR][1000 genomes]
rs11726946	0.92[EUR][1000 genomes]
rs11730594	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11737566	0.81[EUR][1000 genomes]
rs12647429	1.00[ASN][1000 genomes]
rs12649131	1.00[ASN][1000 genomes]
rs12649361	0.99[ASN][1000 genomes]
rs12650284	0.83[ASN][1000 genomes]
rs12650679	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12651295	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12651318	0.99[ASN][1000 genomes]
rs12651473	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13129967	0.96[ASN][1000 genomes]
rs1458232	0.86[ASN][1000 genomes]
rs1458247	0.87[EUR][1000 genomes]
rs1598905	0.87[ASN][1000 genomes]
rs17146976	0.98[ASN][1000 genomes]
rs17147013	0.83[ASN][1000 genomes]
rs1841042	0.85[ASN][1000 genomes]
rs2670430	0.86[EUR][1000 genomes]
rs294772	0.85[ASN][1000 genomes]
rs4694367	0.85[ASN][1000 genomes]
rs4694390	0.87[ASN][1000 genomes]
rs58213278	1.00[ASN][1000 genomes]
rs59838953	1.00[ASN][1000 genomes]
rs6600856	0.87[ASN][1000 genomes]
rs6827243	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6835571	0.87[ASN][1000 genomes]
rs6851328	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6857353	0.83[EUR][1000 genomes]
rs6858469	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72849092	0.99[ASN][1000 genomes]
rs72849093	0.95[ASN][1000 genomes]
rs72849098	1.00[ASN][1000 genomes]
rs7665417	0.85[EUR][1000 genomes]
rs7668868	0.85[EUR][1000 genomes]
rs7681837	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7682207	0.95[EUR][1000 genomes]
rs7691369	0.95[EUR][1000 genomes]
rs7693037	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9329036	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv879377	chr4:69663003-69771935	Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv879378	chr4:69673775-69771935	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	esv3398036	chr4:69700493-69841391	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
9	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
10	nsv436447	chr4:69743339-69851390	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv518690	chr4:69752468-69772694	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69750000-69763000	Weak transcription	Pancreas	Pancrea
2	chr4:69761200-69763200	Enhancers	Liver	Liver
3	chr4:69762000-69769400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:69762800-69763200	Enhancers	Fetal Intestine Large	intestine

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