Variant report

Variant	rs7679165
Chromosome Location	chr4:91868624-91868625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12507128	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12642829	1.00[TSI][hapmap]
rs12647823	1.00[CEU][hapmap]
rs12649659	1.00[CEU][hapmap]
rs13114931	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13146698	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs13148851	0.82[CHD][hapmap]
rs1454339	0.84[MEX][hapmap]
rs17017863	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17017867	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17017905	1.00[CEU][hapmap];0.82[CHD][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35264495	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35825817	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59796895	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7680898	1.00[CEU][hapmap];0.81[CHD][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7688241	1.00[CEU][hapmap];0.82[CHD][hapmap];0.93[MEX][hapmap];0.85[TSI][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7692162	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2755332	chr4:91782522-91869222	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv594834	chr4:91866171-91872431	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91860800-91869200	Weak transcription	Gastric	stomach
2	chr4:91868400-91870600	Weak transcription	Hela-S3	cervix
3	chr4:91868400-91871000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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