Variant report

Variant	rs7679341
Chromosome Location	chr4:54499886-54499887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17083205	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34832930	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60255253	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73250981	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7668052	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54485200-54505800	Weak transcription	Esophagus	oesophagus
2	chr4:54494600-54507000	Weak transcription	Right Ventricle	heart
3	chr4:54496000-54500600	Weak transcription	Lung	lung
4	chr4:54497400-54501400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:54498600-54501200	Weak transcription	Left Ventricle	heart
6	chr4:54499000-54500400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:54499200-54500000	Enhancers	Small Intestine	intestine
8	chr4:54499200-54500200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:54499200-54500400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:54499200-54503000	Enhancers	Ovary	ovary
11	chr4:54499400-54500200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:54499400-54500200	Enhancers	Osteobl	bone
13	chr4:54499400-54500400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:54499600-54500200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr4:54499600-54500400	Enhancers	NHDF-Ad	bronchial
16	chr4:54499600-54500400	Enhancers	NHLF	lung
17	chr4:54499800-54500200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:54499800-54500200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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