Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10850995	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10850997	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11069005	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11069008	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12229996	0.90[EUR][1000 genomes]
rs12230043	0.90[EUR][1000 genomes]
rs12304093	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1356949	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1520780	0.96[ASN][1000 genomes]
rs2005052	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2393419	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2730576	0.83[ASN][1000 genomes]
rs4325365	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4379898	0.90[EUR][1000 genomes]
rs4594061	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61334810	0.91[AMR][1000 genomes]
rs6490193	0.86[EUR][1000 genomes]
rs7135110	0.90[EUR][1000 genomes]
rs7302191	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9705664	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1043906	chr12:118991884-119087146	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs767957	CXCL16	trans	brain	seeQTL
rs767957	TREM2	trans	brain	seeQTL
rs767957	NCF1	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119028400-119038800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:119037200-119038600	Enhancers	HepG2	liver
3	chr12:119038400-119041200	Weak transcription	Pancreas	Pancrea

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