Variant report

Variant	rs7679933
Chromosome Location	chr4:57975998-57975999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:57975916-57977186	HUVEC	blood vessel:	n/a	n/a
2	MAX	chr4:57975936-57976422	A549	lung:	n/a	n/a
3	RAD21	chr4:57975818-57977524	IMR90	lung:	n/a	n/a
4	MAZ	chr4:57975533-57978084	IMR90	lung:	n/a	n/a
5	POLR2A	chr4:57972428-57977904	IMR90	lung:	n/a	n/a
6	POLR2A	chr4:57975977-57977225	ProgFib	skin:	n/a	n/a
7	POLR2A	chr4:57975464-57977315	HUVEC	blood vessel:	n/a	n/a
8	CHD1	chr4:57973519-57977830	IMR90	lung:	n/a	n/a
9	POLR2A	chr4:57975916-57976137	A549	lung:	n/a	n/a
10	SPI1	chr4:57975506-57976040	HL-60	blood:	n/a	chr4:57975748-57975757
11	POLR2A	chr4:57975936-57976196	MCF-7	breast:	n/a	n/a
12	POLR2A	chr4:57975837-57976844	A549	lung:	n/a	n/a
13	MAX	chr4:57975801-57976909	A549	lung:	n/a	n/a
14	POLR2A	chr4:57975793-57976942	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr4:57975161-57977444	HUVEC	blood vessel:	n/a	n/a
16	ZNF143	chr4:57975845-57976404	H1-hESC	embryonic stem cell:	n/a	n/a
17	MAX	chr4:57975860-57976674	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr4:57975950-57976663	A549	lung:	n/a	n/a
19	POLR2A	chr4:57975484-57977753	HL-60	blood:	n/a	n/a
20	CTBP2	chr4:57975585-57977526	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr4:57975736-57977586	HL-60	blood:	n/a	n/a
22	MXI1	chr4:57974888-57977913	IMR90	lung:	n/a	n/a
23	POLR2A	chr4:57975457-57977126	HUVEC	blood vessel:	n/a	n/a
24	REST	chr4:57975591-57977728	HL-60	blood:	n/a	chr4:57976519-57976529 chr4:57977134-57977147 chr4:57977324-57977332 chr4:57976830-57976843
25	POLR2A	chr4:57975797-57977594	HUVEC	blood vessel:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POLR2B-1	chr4:57975928-57976136	ENSG00000245067.2
2	lnc-POLR2B-1	chr4:57975928-57976539	NONHSAT096544

Variant related genes	Relation type
IGFBP7-AS1	TF binding region
ENSG00000238541	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	esv3324890	chr4:57975020-57977568	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57971400-57976200	Active TSS	Stomach Smooth Muscle	stomach
2	chr4:57972400-57977800	Active TSS	Aorta	Aorta
3	chr4:57973200-57977000	Active TSS	Fetal Kidney	kidney
4	chr4:57973200-57977600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr4:57973200-57977600	Active TSS	Psoas Muscle	Psoas
6	chr4:57973200-57977800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr4:57973400-57976600	Weak transcription	Fetal Heart	heart
8	chr4:57973400-57977200	Active TSS	Brain Hippocampus Middle	brain
9	chr4:57973400-57977600	Active TSS	Left Ventricle	heart
10	chr4:57973600-57977600	Active TSS	Right Ventricle	heart
11	chr4:57973600-57977800	Active TSS	Ovary	ovary
12	chr4:57973600-57977800	Active TSS	Right Atrium	heart
13	chr4:57973800-57977000	Active TSS	HSMMtube	muscle
14	chr4:57973800-57977400	Active TSS	Brain Anterior Caudate	brain
15	chr4:57974000-57976400	Active TSS	NH-A	brain
16	chr4:57974200-57977000	Active TSS	A549	lung
17	chr4:57974200-57977800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:57974400-57976800	Active TSS	Muscle Satellite Cultured Cells	--
19	chr4:57974400-57976800	Active TSS	NHLF	lung
20	chr4:57974400-57977600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:57974600-57976000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:57974600-57976600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:57974600-57977000	Active TSS	NHEK	skin
24	chr4:57974600-57977400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:57974800-57976000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:57974800-57976800	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr4:57974800-57976800	Active TSS	Osteobl	bone
28	chr4:57974800-57977400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:57975000-57976800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
30	chr4:57975000-57977000	Active TSS	Rectal Smooth Muscle	rectum
31	chr4:57975000-57977000	Active TSS	HSMM	muscle
32	chr4:57975000-57977400	Active TSS	Colon Smooth Muscle	Colon
33	chr4:57975000-57977600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:57975000-57977800	Active TSS	Brain Substantia Nigra	brain
35	chr4:57975000-57977800	Active TSS	NHDF-Ad	bronchial
36	chr4:57975200-57976200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr4:57975200-57976200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr4:57975200-57976200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
39	chr4:57975200-57976200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
40	chr4:57975200-57976800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
41	chr4:57975200-57977000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
42	chr4:57975200-57977000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
43	chr4:57975200-57977600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr4:57975200-57977600	Active TSS	Brain Cingulate Gyrus	brain
45	chr4:57975200-57977600	Active TSS	Lung	lung
46	chr4:57975400-57976000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
47	chr4:57975400-57976000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
48	chr4:57975400-57976200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:57975400-57976200	Active TSS	Fetal Lung	lung
50	chr4:57975400-57976200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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