Variant report

Variant	rs7680299
Chromosome Location	chr4:30333062-30333063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10027639	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16883230	0.84[ASN][1000 genomes]
rs2117460	0.84[ASN][1000 genomes]
rs28444748	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3842910	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3857027	0.84[ASN][1000 genomes]
rs7653984	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878804	chr4:30162762-30412195	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30332600-30333200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
2	chr4:30332600-30333200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:30332600-30333200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:30332600-30333200	ZNF genes & repeats	Aorta	Aorta
5	chr4:30332600-30333400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:30332800-30333400	ZNF genes & repeats	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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