Variant report

Variant	rs7680454
Chromosome Location	chr4:96677969-96677970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10020312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10440378	1.00[ASN][1000 genomes]
rs17024573	0.82[ASN][1000 genomes]
rs28425535	1.00[ASN][1000 genomes]
rs28481383	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28526484	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28564574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566853	1.00[ASN][1000 genomes]
rs28618209	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532574	1.00[ASN][1000 genomes]
rs7661168	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv428767	chr4:96676384-96831793	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96665800-96682200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:96666600-96682800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:96677400-96679200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:96677400-96680200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:96677600-96678200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:96677600-96680000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:96677800-96679800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:96677800-96680000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:96677800-96682200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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