Variant report

Variant	rs7680539
Chromosome Location	chr4:85076703-85076704
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10017709	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10022978	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10025498	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10033438	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516714	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10857224	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11933688	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13118466	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13143306	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1344305	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17008055	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17008130	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17008193	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1882386	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1882387	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1882390	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1882394	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1921857	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1921859	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1921860	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1921862	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1921863	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1921866	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1950126	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1950127	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1950128	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1997477	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1997478	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2103383	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2141805	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2178601	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2178604	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28481766	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28484825	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2868870	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28698172	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2903945	0.89[EUR][1000 genomes]
rs34441355	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4693107	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4693108	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4693672	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4693674	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4693675	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56715771	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6535519	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6535520	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6815073	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6846444	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6856117	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6856193	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7661961	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7669457	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7683351	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7684582	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7684739	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7684962	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7695490	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9992012	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9994508	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9994528	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85075800-85076800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr4:85075800-85076800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:85075800-85077000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:85076000-85076800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:85076000-85076800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:85076000-85077000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:85076000-85077000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:85076200-85076800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:85076400-85076800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:85076400-85077000	Enhancers	HUES64 Cell Line	embryonic stem cell

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