Variant report

Variant	rs7680915
Chromosome Location	chr4:21633830-21633831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10012127	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736523	0.93[CEU][hapmap]
rs12504857	1.00[CEU][hapmap]
rs1532785	0.93[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17483325	1.00[CEU][hapmap];0.90[GIH][hapmap];0.85[MEX][hapmap];0.80[EUR][1000 genomes]
rs17485906	0.93[CEU][hapmap]
rs17557761	0.86[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap]
rs2323071	0.94[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28697050	0.80[EUR][1000 genomes]
rs57084368	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664834	1.00[CEU][hapmap]
rs9631703	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993770	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994753	0.86[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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