Variant report

Variant	rs7682442
Chromosome Location	chr4:110798937-110798938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1476753	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57534900	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58791811	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72892676	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73839195	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73839196	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9685587	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110791800-110799600	Weak transcription	Brain Angular Gyrus	brain
2	chr4:110796200-110800200	Weak transcription	Psoas Muscle	Psoas
3	chr4:110796600-110800200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:110797600-110799600	Weak transcription	Pancreas	Pancrea
5	chr4:110798400-110799000	Enhancers	Fetal Heart	heart
6	chr4:110798400-110799200	Enhancers	NHEK	skin
7	chr4:110798600-110799000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:110798600-110799000	Flanking Active TSS	GM12878-XiMat	blood
9	chr4:110798800-110799000	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr4:110798800-110800200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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