Variant report

Variant	rs7682855
Chromosome Location	chr4:110982146-110982147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:110981481-110982599	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110977785..110984731-chr4:111116105..111121044,7	MCF-7	breast:

Variant related genes	Relation type
ELOVL6	TF binding region
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1060855	0.86[AMR][1000 genomes]
rs11730785	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55801944	0.91[AMR][1000 genomes]
rs56013071	0.86[AMR][1000 genomes]
rs72676978	0.91[AMR][1000 genomes]
rs72676985	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9997849	0.91[AMR][1000 genomes]
rs9997926	1.00[MEX][hapmap];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv595145	chr4:110969572-110982248	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	esv1798003	chr4:110981611-110996948	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110964600-111004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:110964800-110982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:110965200-110986600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:110965400-110994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:110970800-110995800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:110971800-110992800	Weak transcription	Fetal Stomach	stomach
7	chr4:110973000-110991000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:110973000-111009200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:110973400-110982200	Weak transcription	K562	blood
10	chr4:110973400-110992400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:110974400-110990600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:110974600-110992600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:110977000-110983000	Weak transcription	Brain Angular Gyrus	brain
14	chr4:110977200-110985000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:110977200-110992400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:110977200-110992600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:110979800-110982400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr4:110980200-110992600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:110980200-111004000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:110980600-110982200	Enhancers	Stomach Mucosa	stomach
21	chr4:110980600-110982600	Enhancers	Dnd41	blood
22	chr4:110980800-110982200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:110980800-110985200	Weak transcription	HepG2	liver
24	chr4:110980800-110990800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:110981000-110982200	Enhancers	Brain Cingulate Gyrus	brain
26	chr4:110981000-110983200	Enhancers	Brain Hippocampus Middle	brain
27	chr4:110981000-110997000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr4:110981000-111004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:110981200-110982200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr4:110981200-110983600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:110981400-110982200	Enhancers	Primary T cells fromperipheralblood	blood
32	chr4:110981400-110982400	Enhancers	Duodenum Mucosa	Duodenum
33	chr4:110981400-110982600	Enhancers	Liver	Liver
34	chr4:110981400-110982600	Enhancers	Brain Substantia Nigra	brain
35	chr4:110981400-110983400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:110981400-110983400	Enhancers	GM12878-XiMat	blood
37	chr4:110981400-110984000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:110981400-110991000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:110981400-110992600	Weak transcription	Adipose Nuclei	Adipose
40	chr4:110981400-111006200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:110981400-111009200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr4:110981600-110982400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr4:110981600-110983200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr4:110981600-110983200	Weak transcription	NHLF	lung
45	chr4:110981600-110983600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr4:110981600-110985400	Weak transcription	Fetal Intestine Large	intestine
47	chr4:110981600-110989400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:110981800-110982400	Enhancers	Brain Anterior Caudate	brain
49	chr4:110982000-110982200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:110982000-110982400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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