Variant report

Variant	rs7682982
Chromosome Location	chr4:15501503-15501504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16892141	0.88[CHD][hapmap]
rs2286976	1.00[ASW][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs719993	0.84[CHD][hapmap]
rs7664843	0.86[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs9990934	0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15481600-15519000	Weak transcription	Gastric	stomach
2	chr4:15482200-15519800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:15482600-15516600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:15482600-15526400	Weak transcription	HMEC	breast
5	chr4:15482800-15518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:15485000-15504800	Weak transcription	Ovary	ovary
7	chr4:15487400-15570400	Weak transcription	Psoas Muscle	Psoas
8	chr4:15490400-15519400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:15490400-15539600	Weak transcription	Esophagus	oesophagus
10	chr4:15490600-15502400	Weak transcription	Lung	lung
11	chr4:15490600-15505000	Weak transcription	Adipose Nuclei	Adipose
12	chr4:15490600-15505200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:15490600-15510600	Weak transcription	Aorta	Aorta
14	chr4:15490600-15519000	Weak transcription	A549	lung
15	chr4:15490800-15504600	Weak transcription	Fetal Kidney	kidney
16	chr4:15491000-15504400	Weak transcription	Fetal Intestine Large	intestine
17	chr4:15491200-15504800	Weak transcription	Osteobl	bone
18	chr4:15491600-15502400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:15491600-15504400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:15491600-15511400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:15491800-15516400	Weak transcription	NHLF	lung
22	chr4:15492200-15503600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:15492200-15511000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:15492400-15505000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:15492400-15505200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:15493400-15504400	Weak transcription	Fetal Intestine Small	intestine
27	chr4:15493400-15504800	Weak transcription	Left Ventricle	heart
28	chr4:15495600-15559400	Weak transcription	HSMMtube	muscle
29	chr4:15496000-15512800	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:15496200-15502400	Weak transcription	Fetal Stomach	stomach
31	chr4:15498200-15538400	Weak transcription	Fetal Heart	heart
32	chr4:15499000-15502800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:15499000-15502800	Weak transcription	Fetal Lung	lung
34	chr4:15499000-15503000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:15499000-15504400	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:15499000-15508200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:15499000-15512800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr4:15499000-15518200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr4:15499200-15502200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:15499200-15504200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:15499200-15504200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr4:15499200-15512200	Weak transcription	Brain Anterior Caudate	brain
43	chr4:15499200-15515800	Weak transcription	Liver	Liver
44	chr4:15499400-15504200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr4:15499600-15516600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr4:15499600-15528400	Weak transcription	Pancreas	Pancrea
47	chr4:15500000-15501600	Enhancers	Right Atrium	heart
48	chr4:15500200-15503000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr4:15500200-15516800	Weak transcription	Brain Germinal Matrix	brain
50	chr4:15500400-15502400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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