Variant report

Variant	rs7683408
Chromosome Location	chr4:60104797-60104798
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13129458	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144205	0.82[ASN][1000 genomes]
rs1393597	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532736	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990147	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995677	0.82[ASN][1000 genomes]
rs995679	0.82[ASN][1000 genomes]
rs995680	0.82[ASN][1000 genomes]
rs9992063	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv998940	chr4:60095522-60132170	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60104000-60109000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:60104600-60104800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:60104600-60105000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:60104600-60105000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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