Variant report

Variant	rs76836285
Chromosome Location	chr10:112683908-112683909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MBD4	chr10:112683821-112684278	HepG2	liver:	n/a	n/a
2	FOXA1	chr10:112683839-112684132	HepG2	liver:	n/a	n/a
3	ATF2	chr10:112683493-112684122	GM12878	blood:	n/a	n/a
4	IKZF1	chr10:112683666-112684104	GM12878	blood:	n/a	n/a
5	MEF2A	chr10:112683594-112684006	GM12878	blood:	n/a	chr10:112683869-112683890
6	MXI1	chr10:112683821-112684212	HepG2	liver:	n/a	n/a
7	FOXA1	chr10:112683722-112684269	HepG2	liver:	n/a	n/a
8	RUNX3	chr10:112683634-112684109	GM12878	blood:	n/a	n/a
9	FOXA1	chr10:112683896-112684235	HepG2	liver:	n/a	n/a
10	TBP	chr10:112683869-112684184	HepG2	liver:	n/a	n/a
11	TEAD4	chr10:112683856-112684246	HepG2	liver:	n/a	n/a
12	MAX	chr10:112683712-112684272	HepG2	liver:	n/a	n/a
13	HEY1	chr10:112683840-112684127	HepG2	liver:	n/a	n/a
14	POLR2A	chr10:112683890-112684275	HepG2	liver:	n/a	n/a
15	EP300	chr10:112683663-112684098	GM12878	blood:	n/a	n/a
16	RAD21	chr10:112683852-112684201	HepG2	liver:	n/a	n/a
17	NFIC	chr10:112683611-112684049	GM12878	blood:	n/a	n/a
18	MXI1	chr10:112683766-112684189	GM12878	blood:	n/a	n/a
19	ARID3A	chr10:112683868-112684280	HepG2	liver:	n/a	n/a
20	FOXA1	chr10:112683826-112684290	HepG2	liver:	n/a	n/a
21	NFIC	chr10:112683491-112684084	GM12878	blood:	n/a	n/a
22	MAX	chr10:112683848-112684202	HepG2	liver:	n/a	n/a
23	FOXA2	chr10:112683831-112684208	HepG2	liver:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112674469..112676467-chr10:112682568..112686399,3	K562	blood:

No data

Variant related genes	Relation type
BBIP1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1047865	chr10:112660427-112730573	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112677400-112684000	Active TSS	GM12878-XiMat	blood
2	chr10:112680200-112684000	Weak transcription	Spleen	Spleen
3	chr10:112680200-112687800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:112680400-112684000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:112680600-112684000	Weak transcription	Gastric	stomach
6	chr10:112680600-112692400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:112680600-112696600	Weak transcription	Lung	lung
8	chr10:112680600-112706800	Weak transcription	Esophagus	oesophagus
9	chr10:112680800-112684000	Weak transcription	Left Ventricle	heart
10	chr10:112680800-112684200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:112680800-112687800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:112680800-112691800	Weak transcription	Ovary	ovary
13	chr10:112680800-112691800	Weak transcription	Psoas Muscle	Psoas
14	chr10:112680800-112704600	Weak transcription	Aorta	Aorta
15	chr10:112681000-112684200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:112681000-112684200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr10:112681000-112684200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:112681000-112684200	Enhancers	Colon Smooth Muscle	Colon
19	chr10:112681000-112687200	Weak transcription	Brain Angular Gyrus	brain
20	chr10:112681000-112687800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:112681000-112687800	Weak transcription	NH-A	brain
22	chr10:112681000-112690600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:112681000-112690800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:112681000-112692200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:112681000-112692400	Weak transcription	Right Atrium	heart
26	chr10:112681000-112696400	Weak transcription	Fetal Stomach	stomach
27	chr10:112681000-112696600	Weak transcription	Thymus	Thymus
28	chr10:112681000-112704600	Weak transcription	Right Ventricle	heart
29	chr10:112681200-112692000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:112681400-112691600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:112681600-112684000	Weak transcription	Fetal Heart	heart
32	chr10:112681600-112684000	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr10:112681600-112685800	Enhancers	Primary B cells from cord blood	blood
34	chr10:112682000-112685400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr10:112682000-112686600	Weak transcription	HSMMtube	muscle
36	chr10:112682000-112688400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:112682000-112691600	Weak transcription	NHEK	skin
38	chr10:112682000-112700600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:112682000-112702000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:112682000-112702200	Weak transcription	Brain Germinal Matrix	brain
41	chr10:112682000-112704600	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:112682000-112708400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr10:112682000-112732400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:112682200-112684000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:112682200-112684400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:112682200-112685000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr10:112682200-112688400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:112682200-112688400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:112682400-112684200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:112682600-112684200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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