Variant report

Variant	rs7684253
Chromosome Location	chr4:57727311-57727312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10866441	0.87[MEX][hapmap]
rs1105434	0.87[MEX][hapmap]
rs12504759	0.90[ASN][1000 genomes]
rs12650282	0.93[ASN][1000 genomes]
rs13101682	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13133982	0.91[ASN][1000 genomes]
rs13148492	0.93[ASN][1000 genomes]
rs1877669	0.87[MEX][hapmap]
rs2271808	0.94[JPT][hapmap]
rs3000	0.87[MEX][hapmap]
rs6838948	0.87[MEX][hapmap]
rs7680140	0.81[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap]
rs7680734	0.87[MEX][hapmap]
rs7697176	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs9637714	0.93[ASN][1000 genomes]
rs9637715	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57723400-57727400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:57723400-57727600	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:57724600-57729400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:57725000-57729400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:57725000-57729400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:57725000-57729600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:57725200-57729800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:57727200-57727400	Flanking Active TSS	GM12878-XiMat	blood
9	chr4:57727200-57727600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:57727200-57727600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:57727200-57727800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr4:57727200-57727800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:57727200-57727800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:57727200-57728000	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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