Variant report

Variant	rs76846531
Chromosome Location	chr10:38281283-38281284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:76)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:76 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:38281220-38281370	HPAF	blood vessel:	n/a	n/a
2	CTCF	chr10:38281241-38281298	MCF-7	breast:	n/a	n/a
3	CTCF	chr10:38281197-38281319	GM13977	blood:	n/a	n/a
4	CTCF	chr10:38281180-38281330	Caco-2	colon:	n/a	n/a
5	SMC3	chr10:38281164-38281398	HepG2	liver:	n/a	n/a
6	SMC3	chr10:38281144-38281325	K562	blood:	n/a	n/a
7	CTCF	chr10:38281180-38281330	HFF	foreskin:	n/a	n/a
8	YY1	chr10:38281149-38281353	K562	blood:	n/a	n/a
9	RAD21	chr10:38281087-38281420	HepG2	liver:	n/a	n/a
10	CTCF	chr10:38281140-38281290	GM12870	blood:	n/a	n/a
11	RAD21	chr10:38281120-38281341	GM12878	blood:	n/a	n/a
12	CTCF	chr10:38281240-38281390	AG09319	gingival:	n/a	n/a
13	CTCF	chr10:38281160-38281310	HMF	breast:	n/a	n/a
14	CTCF	chr10:38281180-38281330	GM12873	blood:	n/a	n/a
15	UBTF	chr10:38281211-38281353	K562	blood:	n/a	n/a
16	CTCF	chr10:38281180-38281330	MCF-7	breast:	n/a	n/a
17	CTCF	chr10:38281160-38281310	HFF-Myc	foreskin:	n/a	n/a
18	CTCF	chr10:38281177-38281339	MCF-7	breast:	n/a	n/a
19	CTCF	chr10:38281094-38281438	GM12878	blood:	n/a	n/a
20	YY1	chr10:38281127-38281427	GM12878	blood:	n/a	n/a
21	CTCF	chr10:38281160-38281310	RPTEC	kidney:	n/a	n/a
22	CTCF	chr10:38281180-38281330	GM12872	blood:	n/a	n/a
23	CTCF	chr10:38281140-38281290	AG09319	gingival:	n/a	n/a
24	CTCF	chr10:38281210-38281395	IMR90	lung:	n/a	n/a
25	CTCF	chr10:38281200-38281350	SK-N-SH_RA	brain:	n/a	n/a
26	CTCF	chr10:38281237-38281295	GM19240	blood:	n/a	n/a
27	CTCF	chr10:38281180-38281330	SAEC	small airway:	n/a	n/a
28	CTCF	chr10:38281200-38281350	GM12867	blood:	n/a	n/a
29	RAD21	chr10:38281199-38281316	K562	blood:	n/a	n/a
30	CTCF	chr10:38281220-38281370	HepG2	liver:	n/a	n/a
31	RAD21	chr10:38281239-38281313	HepG2	liver:	n/a	n/a
32	RAD21	chr10:38281186-38281353	K562	blood:	n/a	n/a
33	CTCF	chr10:38281140-38281290	A549	lung:	n/a	n/a
34	CTCF	chr10:38281159-38281383	K562	blood:	n/a	n/a
35	CTCF	chr10:38281160-38281310	GM12874	blood:	n/a	n/a
36	CTCF	chr10:38281140-38281290	HPAF	blood vessel:	n/a	n/a
37	CTCF	chr10:38281200-38281350	WERI-Rb-1	eye:	n/a	n/a
38	CTCF	chr10:38281140-38281290	BE2_C	brain:	n/a	n/a
39	CTCF	chr10:38281160-38281310	HVMF	connective:	n/a	n/a
40	CTCF	chr10:38281160-38281310	HEK293	kidney:	n/a	n/a
41	RUNX3	chr10:38280962-38281357	GM12878	blood:	n/a	n/a
42	CTCF	chr10:38281203-38281346	HepG2	liver:	n/a	n/a
43	CTCF	chr10:38281229-38281322	GM12892	blood:	n/a	n/a
44	CTCF	chr10:38281192-38281353	HepG2	liver:	n/a	n/a
45	CTCF	chr10:38281240-38281390	SK-N-SH_RA	brain:	n/a	n/a
46	RAD21	chr10:38280952-38281458	MCF-7	breast:	n/a	n/a
47	RAD21	chr10:38281069-38281463	HepG2	liver:	n/a	n/a
48	CTCF	chr10:38281086-38281451	K562	blood:	n/a	n/a
49	TBL1XR1	chr10:38281237-38281338	K562	blood:	n/a	n/a
50	CTCF	chr10:38281160-38281310	HCT-116	colon:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF33A-1	chr10:38281255-38281395	ENSG00000226447
2	lnc-ZNF33A-1	chr10:38281255-38281394	NONHSAT012800

No data

Variant related genes	Relation type
ENSG00000206840	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv947852	chr10:38281203-38283172	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38280600-38281400	Enhancers	Dnd41	blood

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