Variant report

Variant	rs7684778
Chromosome Location	chr4:76641919-76641920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:76640057..76642615-chr4:76643666..76645521,2	MCF-7	breast:
2	chr4:76640891..76645674-chr4:76646043..76650611,7	K562	blood:
3	chr4:76633806..76638911-chr4:76639388..76643502,4	K562	blood:

Variant related genes	Relation type
ENSG00000138768	Chromatin interaction
ENSG00000138757	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10031352	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11097117	0.82[ASN][1000 genomes]
rs11097121	0.82[ASN][1000 genomes]
rs11727895	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11732850	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11734358	0.86[ASN][1000 genomes]
rs11935073	0.82[ASN][1000 genomes]
rs12233780	0.82[ASN][1000 genomes]
rs12505147	0.84[ASN][1000 genomes]
rs12506101	0.84[ASN][1000 genomes]
rs12508200	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12508992	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12511212	0.82[ASN][1000 genomes]
rs13137229	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16996019	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000786	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17000794	0.82[ASN][1000 genomes]
rs17000864	0.82[ASN][1000 genomes]
rs186563	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2089253	0.82[ASN][1000 genomes]
rs2175640	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28573275	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28680723	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324686	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324688	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324690	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324691	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324693	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324696	0.87[ASN][1000 genomes]
rs324697	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324698	0.87[ASN][1000 genomes]
rs324700	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324701	0.87[ASN][1000 genomes]
rs324703	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324709	0.84[EUR][1000 genomes]
rs324712	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324713	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324719	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324722	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324723	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324727	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324730	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324731	0.87[ASN][1000 genomes]
rs324733	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324735	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs324738	0.84[ASN][1000 genomes]
rs324740	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4262008	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61603278	0.82[ASN][1000 genomes]
rs6531934	0.82[ASN][1000 genomes]
rs6827016	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6834747	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6856162	0.82[ASN][1000 genomes]
rs72858061	0.82[ASN][1000 genomes]
rs7657198	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7663617	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7693127	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1003516	chr4:76597112-76729576	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv537143	chr4:76597112-76729576	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76599600-76647600	Weak transcription	Fetal Brain Female	brain
2	chr4:76621800-76642400	Weak transcription	Left Ventricle	heart
3	chr4:76623800-76647600	Weak transcription	Fetal Heart	heart
4	chr4:76624400-76647200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:76624400-76647800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:76624600-76646800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:76624800-76647600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:76628800-76642200	Weak transcription	Fetal Stomach	stomach
9	chr4:76631000-76642000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:76631000-76643600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:76631000-76648800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:76631600-76648000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:76633600-76642200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:76633600-76642600	Weak transcription	Fetal Intestine Large	intestine
15	chr4:76633600-76643800	Weak transcription	Primary T cells from cord blood	blood
16	chr4:76633600-76647000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:76633600-76648200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:76633800-76643600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr4:76633800-76648000	Weak transcription	Fetal Kidney	kidney
20	chr4:76634000-76647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:76634000-76647800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr4:76635200-76644800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:76635400-76648200	Weak transcription	Primary B cells from cord blood	blood
24	chr4:76635600-76643600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:76636400-76643600	Weak transcription	HUVEC	blood vessel
26	chr4:76636400-76648600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:76637200-76642200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr4:76638200-76643600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr4:76639200-76643600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr4:76640400-76648200	Weak transcription	Stomach Mucosa	stomach
31	chr4:76640600-76643600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:76640800-76642000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:76640800-76642400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:76640800-76642600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:76640800-76642600	Weak transcription	Gastric	stomach
36	chr4:76640800-76643600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr4:76640800-76647200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr4:76640800-76647200	Weak transcription	Fetal Lung	lung
39	chr4:76640800-76647600	Weak transcription	Fetal Thymus	thymus
40	chr4:76640800-76648200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:76640800-76648200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr4:76640800-76648400	Weak transcription	Placenta	Placenta
43	chr4:76640800-76648400	Weak transcription	Right Atrium	heart
44	chr4:76640800-76649200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:76640800-76649400	Weak transcription	Lung	lung
46	chr4:76641000-76642000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:76641000-76642600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:76641000-76642600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:76641000-76642600	Weak transcription	NHEK	skin
50	chr4:76641000-76642800	Weak transcription	Colon Smooth Muscle	Colon

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