Variant report
| Variant | rs7687302 |
|---|---|
| Chromosome Location | chr4:62555727-62555728 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10007614 | 0.81[AMR][1000 genomes] |
| rs11131340 | 0.87[AMR][1000 genomes] |
| rs11131341 | 0.84[AMR][1000 genomes] |
| rs11931258 | 0.87[AMR][1000 genomes] |
| rs12233820 | 0.86[AMR][1000 genomes] |
| rs12233859 | 0.86[AMR][1000 genomes] |
| rs12507326 | 0.86[AMR][1000 genomes] |
| rs13115278 | 0.86[AMR][1000 genomes] |
| rs13142656 | 0.87[AMR][1000 genomes] |
| rs1391320 | 0.86[AMR][1000 genomes] |
| rs1497897 | 0.87[AMR][1000 genomes] |
| rs1497899 | 0.86[AMR][1000 genomes] |
| rs1497900 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1542834 | 0.86[AMR][1000 genomes] |
| rs2036199 | 0.88[AMR][1000 genomes] |
| rs2343526 | 0.84[AMR][1000 genomes] |
| rs4552500 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4860422 | 0.84[AMR][1000 genomes] |
| rs4860423 | 0.86[AMR][1000 genomes] |
| rs4860424 | 0.86[AMR][1000 genomes] |
| rs57415754 | 0.87[AMR][1000 genomes] |
| rs6820960 | 0.81[AMR][1000 genomes] |
| rs7690118 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7690472 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs996208 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461377 | chr4:62368762-62883431 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv594328 | chr4:62368762-62883431 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv968064 | chr4:62554545-62557658 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:62549200-62560400 | Weak transcription | Fetal Stomach | stomach |
| 2 | chr4:62552600-62556600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
