Variant report

Variant	rs7689908
Chromosome Location	chr4:90125874-90125875
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13103962	0.89[EUR][1000 genomes]
rs13110067	0.87[EUR][1000 genomes]
rs13116910	0.87[EUR][1000 genomes]
rs13128119	0.89[EUR][1000 genomes]
rs13135958	0.89[EUR][1000 genomes]
rs16996178	1.00[EUR][1000 genomes]
rs17822121	0.86[EUR][1000 genomes]
rs17822463	0.86[EUR][1000 genomes]
rs34685087	0.87[EUR][1000 genomes]
rs35367738	0.90[EUR][1000 genomes]
rs36074996	0.87[EUR][1000 genomes]
rs62304663	0.86[EUR][1000 genomes]
rs62304664	0.86[EUR][1000 genomes]
rs67287021	0.90[EUR][1000 genomes]
rs7688911	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9995167	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv830002	chr4:90056232-90258865	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv594809	chr4:90123667-90132470	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90117800-90127800	Weak transcription	Pancreas	Pancrea
2	chr4:90125000-90127200	Enhancers	Hela-S3	cervix
3	chr4:90125400-90126400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:90125800-90126400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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