Variant report

Variant	rs7690306
Chromosome Location	chr4:863917-863918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr4:863199-864029	GM12878	blood:	n/a	n/a
2	POLR2A	chr4:863710-864040	GM12878	blood:	n/a	n/a
3	ZBTB33	chr4:862831-864003	GM12878	blood:	n/a	n/a
4	POLR2A	chr4:862569-864172	GM12892	blood:	n/a	n/a
5	STAT5A	chr4:862491-863966	K562	blood:	n/a	n/a
6	POLR2A	chr4:862531-864158	GM12878	blood:	n/a	n/a
7	POLR2A	chr4:863852-864261	K562	blood:	n/a	n/a
8	POLR2A	chr4:863491-864200	K562	blood:	n/a	n/a
9	POLR2A	chr4:863453-864578	K562	blood:	n/a	n/a
10	MXI1	chr4:863690-863926	HepG2	liver:	n/a	n/a
11	BCL3	chr4:863395-864132	GM12878	blood:	n/a	n/a
12	NFIC	chr4:863546-863973	GM12878	blood:	n/a	n/a
13	POLR2A	chr4:862621-863960	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr4:862609-864061	GM12891	blood:	n/a	n/a
15	POLR2A	chr4:863784-863958	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr4:862606-863982	GM12878	blood:	n/a	n/a
17	NFATC1	chr4:863393-864113	GM12878	blood:	n/a	n/a
18	POLR2A	chr4:862584-864013	GM12891	blood:	n/a	n/a
19	POLR2A	chr4:862630-864010	GM12891	blood:	n/a	n/a
20	POLR2A	chr4:862542-864106	GM12878	blood:	n/a	n/a
21	TCF3	chr4:863230-864190	GM12878	blood:	n/a	n/a
22	NFATC1	chr4:863434-864134	GM12878	blood:	n/a	n/a
23	NR2C2	chr4:862712-863919	GM12878	blood:	n/a	n/a
24	BCL3	chr4:863428-864091	GM12878	blood:	n/a	n/a
25	POLR2A	chr4:863594-864114	K562	blood:	n/a	n/a
26	POLR2A	chr4:863108-863942	GM12878	blood:	n/a	n/a
27	POLR2A	chr4:862530-864176	HepG2	liver:	n/a	n/a
28	POLR2A	chr4:863414-864056	HL-60	blood:	n/a	n/a
29	SUZ12	chr4:862587-863969	H1-hESC	embryonic stem cell:	n/a	n/a
30	STAT5A	chr4:863390-864060	GM12878	blood:	n/a	n/a
31	TCF12	chr4:863390-863990	HepG2	liver:	n/a	n/a
32	TCF3	chr4:863711-863983	GM12878	blood:	n/a	n/a
33	POLR2A	chr4:862608-864014	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:863878-863928	HCM	heart:	n/a
2	chr4:863878-863928	BE2_C	brain:	n/a
3	chr4:863878-863928	SAEC	small airway:	n/a
4	chr4:863878-863928	HEK293	kidney:	embryo
5	chr4:863878-863928	HCF	heart:	n/a
6	chr4:863878-863928	HPAEpiC	pulmonary alveolar:	n/a
7	chr4:863878-863928	GM12892	blood:	n/a
8	chr4:863878-863928	PANC-1	pancreas:	n/a
9	chr4:863878-863928	HEEpiC	esophagus:	n/a
10	chr4:863878-863928	HMEC	breast:	n/a
11	chr4:863878-863928	SK-N-MC	brain:	n/a
12	chr4:863878-863928	HL-60	blood:	n/a
13	chr4:863878-863928	A549	lung:	n/a
14	chr4:863878-863928	AG04449	skin:	fetal
15	chr4:863878-863928	PFSK-1	brain:	n/a
16	chr4:863878-863928	PrEC	prostate:	n/a
17	chr4:863878-863928	HIPEpiC	eye:	n/a
18	chr4:863878-863928	NHDF-neo	bronchial:	n/a
19	chr4:863878-863928	Caco-2	colon:	n/a
20	chr4:863878-863928	AoSMC	blood vessel:	n/a
21	chr4:863878-863928	HRPEpiC	eye:	n/a
22	chr4:863878-863928	NT2-D1	testis:	n/a
23	chr4:863878-863928	HepG2	liver:	n/a
24	chr4:863878-863928	MCF10A-Er-Src	breast:	n/a
25	chr4:863878-863928	Hepatocyte	liver:	n/a
26	chr4:863878-863928	AG10803	skin:	n/a
27	chr4:863878-863928	SK-N-SH_RA	brain:	n/a
28	chr4:863878-863928	CMK	blood:	n/a
29	chr4:863878-863928	HUVEC	blood vessel:	n/a
30	chr4:863878-863928	AG09309	skin:	n/a
31	chr4:863878-863928	ovcar-3	ovarian:	n/a
32	chr4:863878-863928	HCT-116	colon:	n/a
33	chr4:863878-863928	IMR90	lung:	fetal
34	chr4:863878-863928	MCF-7	breast:	n/a
35	chr4:863878-863928	AG04450	lung:	fetal
36	chr4:863878-863928	Jurkat	blood:	n/a
37	chr4:863878-863928	HRE	kidney:	n/a
38	chr4:863878-863928	SKMC	muscle:	n/a
39	chr4:863878-863928	GM19239	blood:	n/a
40	chr4:863878-863928	HAEpiC	amniotic membrane:	n/a
41	chr4:863878-863928	NB4	blood:	n/a
42	chr4:863878-863928	U87	brain:	n/a
43	chr4:863878-863928	GM12891	blood:	n/a
44	chr4:863878-863928	HCPEpiC	choroid plexus:	n/a
45	chr4:863878-863928	GM12878	blood:	n/a
46	chr4:863878-863928	HNPCEpiC	eye:	n/a
47	chr4:863878-863928	NHBE	bronchial:	n/a
48	chr4:863878-863928	ProgFib	skin:	n/a
49	chr4:863878-863928	GM06990	blood:	n/a
50	chr4:863878-863928	AG09319	gingival:	n/a

No data

Variant related genes	Relation type
GAK	TF binding region
GAK	CpG island

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10023660	0.84[ASW][hapmap];0.86[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10902760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11725376	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11731840	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11735882	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2279180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2279185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3736086	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6828147	0.89[EUR][1000 genomes]
rs6843215	0.94[EUR][1000 genomes]
rs6843838	0.89[EUR][1000 genomes]
rs73064427	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7669133	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7697252	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005224	chr4:507005-900281	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv536976	chr4:507005-900281	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
4	esv2757916	chr4:603208-931354	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	esv2759217	chr4:603208-931354	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv878247	chr4:607202-925149	Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
8	esv1829397	chr4:655939-1041957	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv878254	chr4:708932-899143	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv878255	chr4:708932-1052488	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
11	nsv878258	chr4:712222-1058358	Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
12	nsv878260	chr4:713920-1052488	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
13	nsv878261	chr4:756686-1047794	Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
14	nsv1003219	chr4:769894-1105464	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
15	nsv878262	chr4:771587-865227	Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv878263	chr4:771587-1047794	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
17	nsv432547	chr4:782301-1053930	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
18	nsv878264	chr4:790757-1047794	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
19	nsv878265	chr4:793929-1024752	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
20	nsv878266	chr4:793929-1058358	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
21	nsv878268	chr4:795890-925149	Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
22	nsv878269	chr4:795890-1024752	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
23	nsv461147	chr4:798511-865227	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
24	nsv593223	chr4:798511-865227	Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
25	nsv878270	chr4:798962-1024752	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
26	esv1814222	chr4:809593-883039	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
27	nsv469998	chr4:809593-1087531	Strong transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
28	nsv878272	chr4:809787-1058358	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
29	esv32803	chr4:813284-867262	Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
30	nsv878273	chr4:813393-888937	Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
31	nsv878274	chr4:813393-891098	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
32	nsv878275	chr4:813393-925149	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
33	nsv1008352	chr4:813393-1035416	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
34	nsv878276	chr4:813393-1047794	Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
35	nsv878277	chr4:813393-1087531	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
36	nsv461148	chr4:821490-863917	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
37	nsv593225	chr4:821490-863917	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
38	nsv1012895	chr4:827866-1054874	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
39	nsv536979	chr4:827866-1054874	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
40	nsv536980	chr4:827866-1167377	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
41	nsv878279	chr4:828148-891098	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
42	nsv878280	chr4:828148-1052488	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
43	nsv878281	chr4:830601-925149	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
44	esv3414154	chr4:837025-978620	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
45	nsv998496	chr4:837273-964391	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
46	nsv1010196	chr4:851357-942660	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
47	esv29984	chr4:851357-964359	Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
48	nsv878282	chr4:854712-925149	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
49	esv3398607	chr4:861452-865050	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
50	nsv878283	chr4:862156-1052488	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:841200-872800	Strong transcription	Rectal Mucosa Donor 29	rectum
2	chr4:841200-881200	Strong transcription	Brain Germinal Matrix	brain
3	chr4:841200-881200	Strong transcription	Duodenum Mucosa	Duodenum
4	chr4:841200-898600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:841200-898800	Strong transcription	Placenta	Placenta
6	chr4:841200-901400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:841200-906000	Strong transcription	Stomach Smooth Muscle	stomach
8	chr4:841400-870800	Strong transcription	Primary T cells from cord blood	blood
9	chr4:841400-884400	Strong transcription	Brain Hippocampus Middle	brain
10	chr4:841400-892000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:841400-907400	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:841600-864000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:842000-881200	Strong transcription	Lung	lung
14	chr4:842000-907400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr4:842200-907600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr4:844200-866400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:844200-907600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr4:844600-864600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:846800-864800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:847200-920000	Weak transcription	Right Atrium	heart
21	chr4:848200-884600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:849600-864800	Strong transcription	Brain Substantia Nigra	brain
23	chr4:849800-875400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:849800-885000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:849800-892200	Strong transcription	Colonic Mucosa	Colon
26	chr4:850000-864800	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr4:850000-878200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:850200-866400	Strong transcription	Adipose Nuclei	Adipose
29	chr4:850200-871400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr4:850200-872400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:850200-884200	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr4:850200-892000	Strong transcription	Primary B cells from peripheral blood	blood
33	chr4:850400-864400	Strong transcription	Rectal Smooth Muscle	rectum
34	chr4:850400-864600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr4:850400-868400	Strong transcription	Brain Cingulate Gyrus	brain
36	chr4:850400-896200	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr4:850600-870800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr4:850600-871400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr4:850600-892400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:850800-872000	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr4:850800-872400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:851000-871400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr4:851200-864800	Strong transcription	Left Ventricle	heart
44	chr4:851400-871400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:851400-871600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr4:852800-864000	Strong transcription	Fetal Thymus	thymus
47	chr4:853400-891000	Weak transcription	Stomach Mucosa	stomach
48	chr4:853600-864000	Strong transcription	Fetal Muscle Trunk	muscle
49	chr4:853600-864000	Strong transcription	Fetal Muscle Leg	muscle
50	chr4:853800-869800	Weak transcription	HUVEC	blood vessel

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