Variant report

Variant	rs769055
Chromosome Location	chr14:63740441-63740442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:63641247..63642022-chr14:63740370..63741339,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10135991	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10138015	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs10145453	0.95[CEU][hapmap];0.94[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10150464	0.89[EUR][1000 genomes]
rs10483766	0.94[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17100922	0.89[EUR][1000 genomes]
rs17100931	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs17100932	0.89[EUR][1000 genomes]
rs17224610	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17824323	0.94[GIH][hapmap]
rs17824443	0.83[EUR][1000 genomes]
rs1884093	0.86[CEU][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs2057133	0.95[CEU][hapmap];0.94[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2057134	0.95[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573499	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs6573500	0.84[EUR][1000 genomes]
rs7144902	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7151486	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7154910	0.83[EUR][1000 genomes]
rs7157513	0.81[EUR][1000 genomes]
rs718362	0.94[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.80[ASN][1000 genomes]
rs718363	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs8007945	0.86[CEU][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs8012836	0.95[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs8013068	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv564893	chr14:63526931-63796122	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1045599	chr14:63540073-63765152	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv516899	chr14:63734499-63753078	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63716000-63754600	Weak transcription	Aorta	Aorta
2	chr14:63717400-63754800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:63730800-63766000	Weak transcription	Spleen	Spleen
4	chr14:63733800-63742200	Strong transcription	HUVEC	blood vessel
5	chr14:63734200-63742600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:63734400-63749800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:63735800-63741600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:63736600-63750800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:63737200-63755400	Weak transcription	Fetal Intestine Large	intestine
10	chr14:63737400-63751200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:63738000-63757800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:63738600-63741000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:63739400-63759400	Weak transcription	Fetal Intestine Small	intestine
14	chr14:63739600-63740600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:63739600-63743000	Enhancers	Fetal Muscle Leg	muscle
16	chr14:63739800-63740800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr14:63739800-63740800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr14:63739800-63741200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:63739800-63741200	Enhancers	Adipose Nuclei	Adipose
20	chr14:63739800-63741600	Enhancers	Fetal Lung	lung
21	chr14:63740000-63740600	Enhancers	Brain Anterior Caudate	brain
22	chr14:63740000-63740800	Enhancers	Fetal Brain Male	brain
23	chr14:63740000-63740800	Enhancers	Left Ventricle	heart
24	chr14:63740000-63740800	Enhancers	Psoas Muscle	Psoas
25	chr14:63740000-63740800	Enhancers	Right Atrium	heart
26	chr14:63740000-63741000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:63740000-63741000	Enhancers	Stomach Smooth Muscle	stomach
28	chr14:63740000-63741600	Enhancers	NHDF-Ad	bronchial
29	chr14:63740200-63740800	Enhancers	Brain Angular Gyrus	brain
30	chr14:63740200-63740800	Genic enhancers	Colon Smooth Muscle	Colon
31	chr14:63740200-63740800	Enhancers	Lung	lung
32	chr14:63740200-63740800	Enhancers	Right Ventricle	heart
33	chr14:63740200-63740800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr14:63740200-63741200	Enhancers	Fetal Muscle Trunk	muscle
35	chr14:63740200-63741200	Genic enhancers	Fetal Stomach	stomach
36	chr14:63740200-63741400	Enhancers	Ovary	ovary
37	chr14:63740400-63740800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
38	chr14:63740400-63741000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:63740400-63741000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr14:63740400-63743200	Weak transcription	NH-A	brain

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