Variant report

Variant	rs7690785
Chromosome Location	chr4:55987185-55987186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7691630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55943200-55990000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:55954000-55989000	Weak transcription	Right Ventricle	heart
3	chr4:55954400-55990400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:55958800-55987800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:55961000-55990000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:55971000-55990000	Weak transcription	Gastric	stomach
7	chr4:55972000-55990800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:55972200-55990000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:55974000-55988600	Weak transcription	Left Ventricle	heart
10	chr4:55977400-55988600	Weak transcription	Lung	lung
11	chr4:55981000-55990000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:55981200-55987600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:55981800-55990000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:55983200-55988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:55983200-55990000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:55983800-55987400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:55983800-55987600	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr4:55984400-55987600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:55984800-55989400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:55985000-55988800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:55985000-55990600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:55985800-55988000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:55986000-55987800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:55986400-55987200	Weak transcription	Adipose Nuclei	Adipose
25	chr4:55986600-55987400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:55986800-55991000	Flanking Active TSS	HUVEC	blood vessel
27	chr4:55986800-55991400	Active TSS	Right Atrium	heart
28	chr4:55987000-55987800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links