Variant report

Variant	rs7691828
Chromosome Location	chr4:28289863-28289864
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11945664	0.84[EUR][1000 genomes]
rs12512625	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1353654	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16880485	0.84[EUR][1000 genomes]
rs6448569	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448570	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822708	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7664957	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878777	chr4:28208093-28343903	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv878778	chr4:28237783-28343903	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1012210	chr4:28246489-28419673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv878779	chr4:28264394-28343903	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv878780	chr4:28273999-28341254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv980124	chr4:28281577-28293004	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2021306	chr4:28289864-28289865	Enhancers Weak transcription	n/a	n/a	n/a	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28280800-28293200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:28288400-28291200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:28288600-28290600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:28288800-28290600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:28288800-28290600	Enhancers	HMEC	breast
6	chr4:28288800-28290600	Enhancers	HSMMtube	muscle
7	chr4:28288800-28290600	Enhancers	NH-A	brain
8	chr4:28289000-28290600	Enhancers	NHEK	skin
9	chr4:28289200-28290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:28289200-28290200	Weak transcription	NHLF	lung
11	chr4:28289200-28291600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:28289400-28290000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:28289400-28290000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:28289400-28290400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:28289400-28290400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:28289400-28290400	Enhancers	HUVEC	blood vessel
17	chr4:28289400-28292200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:28289600-28290000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:28289600-28290000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:28289600-28290200	Enhancers	A549	lung
21	chr4:28289600-28290400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:28289600-28290400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:28289800-28290000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:28289800-28290000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:28289800-28290600	Enhancers	HSMM	muscle
26	chr4:28289800-28290600	Enhancers	NHDF-Ad	bronchial
27	chr4:28289800-28293000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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