Variant report

Variant	rs7691857
Chromosome Location	chr4:103606273-103606274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103604175..103606327-chr4:103607007..103609437,2	MCF-7	breast:
2	chr4:103597141..103600825-chr4:103602971..103607056,3	K562	blood:
3	chr4:103603495..103606778-chr4:103609035..103613209,7	K562	blood:
4	chr4:103603807..103606307-chr4:103609358..103612973,3	K562	blood:
5	chr4:103599501..103601937-chr4:103604517..103607983,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17033155	0.87[YRI][hapmap]
rs17033168	0.93[YRI][hapmap]
rs2084776	0.84[YRI][hapmap]
rs7670315	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008110	chr4:103560583-103684526	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103542400-103617400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:103547000-103658200	Weak transcription	Small Intestine	intestine
3	chr4:103551000-103607600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr4:103551000-103607800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr4:103553000-103651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:103553400-103608200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:103553400-103651400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:103556200-103650400	Weak transcription	Pancreas	Pancrea
9	chr4:103557600-103626400	Weak transcription	Lung	lung
10	chr4:103559600-103617200	Weak transcription	Fetal Stomach	stomach
11	chr4:103561000-103614600	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:103563400-103617600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:103563600-103609400	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:103570800-103618000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:103571800-103608600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:103571800-103611800	Weak transcription	Brain Anterior Caudate	brain
17	chr4:103571800-103633600	Weak transcription	HepG2	liver
18	chr4:103571800-103655800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:103572000-103640800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr4:103572800-103612600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr4:103579400-103615000	Weak transcription	Psoas Muscle	Psoas
22	chr4:103580000-103644000	Weak transcription	Aorta	Aorta
23	chr4:103580400-103640600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:103581200-103609200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:103581200-103627000	Weak transcription	Gastric	stomach
26	chr4:103581800-103681000	Weak transcription	Spleen	Spleen
27	chr4:103584800-103608400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr4:103585200-103608600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:103585200-103609200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:103585600-103613800	Weak transcription	Fetal Intestine Large	intestine
31	chr4:103586000-103607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:103586000-103640600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:103589000-103618000	Weak transcription	Colon Smooth Muscle	Colon
34	chr4:103589400-103608600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr4:103589600-103608800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:103590000-103626200	Weak transcription	Ovary	ovary
37	chr4:103590200-103608800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr4:103590200-103610800	Weak transcription	Liver	Liver
39	chr4:103590200-103616800	Weak transcription	Fetal Lung	lung
40	chr4:103591800-103609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:103594200-103614000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr4:103594400-103609600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr4:103594400-103610800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr4:103594400-103617400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr4:103594400-103624200	Weak transcription	Fetal Intestine Small	intestine
46	chr4:103594600-103609600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr4:103594600-103612200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr4:103595200-103609800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr4:103595200-103617400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr4:103595800-103613800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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