Variant report

Variant	rs7692123
Chromosome Location	chr4:74156356-74156357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6836583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6838649	1.00[AMR][1000 genomes]
rs7657965	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7658135	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74127000-74158600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:74143000-74158000	Weak transcription	Aorta	Aorta
3	chr4:74147800-74157800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:74148200-74157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:74150400-74159200	Weak transcription	Primary T cells from cord blood	blood
6	chr4:74152000-74158200	Weak transcription	Liver	Liver
7	chr4:74152200-74158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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