Variant report

Variant	rs769271
Chromosome Location	chr11:26996003-26996004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11826758	1.00[AMR][1000 genomes]
rs7117288	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897147	chr11:26983363-27258899	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26993200-26996600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr11:26994200-26997600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:26995000-26996200	Enhancers	HSMMtube	muscle
4	chr11:26995200-26996200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:26995200-26996200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:26995200-26996200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:26995200-26996200	Enhancers	Fetal Stomach	stomach
8	chr11:26995200-26996200	Enhancers	HSMM	muscle
9	chr11:26995200-26996200	Enhancers	NHDF-Ad	bronchial
10	chr11:26995200-26996200	Enhancers	Osteobl	bone
11	chr11:26995200-26996400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:26995200-26996400	Enhancers	Fetal Lung	lung
13	chr11:26995200-26996400	Enhancers	Stomach Smooth Muscle	stomach
14	chr11:26995200-26996600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:26995200-26998000	Enhancers	Colon Smooth Muscle	Colon
16	chr11:26995200-26998200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:26995400-26996200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:26995400-26996200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:26995400-26997200	Weak transcription	Ovary	ovary
20	chr11:26995600-26996200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:26995600-26996200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:26995600-26996200	Enhancers	Rectal Smooth Muscle	rectum
23	chr11:26995600-26996200	Enhancers	NH-A	brain
24	chr11:26995800-26996200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:26995800-26996400	Enhancers	Duodenum Smooth Muscle	Duodenum

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