Variant report

Variant	rs7693529
Chromosome Location	chr4:31124183-31124184
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:31113180..31114961-chr4:31123223..31124998,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10003037	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10006845	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10013484	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10028386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10030161	0.85[EUR][1000 genomes]
rs1044353	0.85[EUR][1000 genomes]
rs11935515	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1463847	0.86[EUR][1000 genomes]
rs1463848	0.86[EUR][1000 genomes]
rs1463849	0.85[EUR][1000 genomes]
rs1499476	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16884471	0.84[EUR][1000 genomes]
rs16884473	0.85[EUR][1000 genomes]
rs1827140	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1827141	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1846526	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483036	0.85[EUR][1000 genomes]
rs28498976	0.85[EUR][1000 genomes]
rs3857021	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4580617	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6448743	0.85[EUR][1000 genomes]
rs6820584	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834969	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655744	0.86[EUR][1000 genomes]
rs7671046	0.86[EUR][1000 genomes]
rs7674487	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9996642	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31116800-31144000	Weak transcription	Aorta	Aorta
2	chr4:31118400-31127000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:31123400-31124200	Enhancers	Fetal Heart	heart
4	chr4:31123400-31124400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:31123600-31124200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:31123600-31124200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:31123600-31124200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:31123600-31124400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:31123600-31125200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:31123800-31124400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:31123800-31124400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:31124000-31125200	Weak transcription	Stomach Mucosa	stomach

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