Variant report

Variant	rs7693747
Chromosome Location	chr4:91481886-91481887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91475885..91478394-chr4:91480421..91482104,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10000355	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10010423	0.86[JPT][hapmap]
rs10018287	0.95[ASN][1000 genomes]
rs10029792	0.88[CEU][hapmap];0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs1074525	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs12645872	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap]
rs1510795	0.87[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs1606038	0.88[CEU][hapmap];0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs2008600	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2063411	0.89[ASN][1000 genomes]
rs2132836	0.88[CEU][hapmap];0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs2132837	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28454680	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28523654	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6532234	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs6825317	0.88[JPT][hapmap]
rs6838828	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs72887422	0.95[ASN][1000 genomes]
rs72887428	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72887445	0.88[ASN][1000 genomes]
rs72887446	0.84[ASN][1000 genomes]
rs7659085	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7692492	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[ASN][1000 genomes]
rs7697633	0.88[CEU][hapmap];0.91[CHB][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1830936	chr4:91287204-91546380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv879543	chr4:91428124-91524285	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879544	chr4:91453933-91490418	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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