Variant report

Variant	rs7694828
Chromosome Location	chr4:75186404-75186405
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:75185069..75187817-chr4:75594549..75599298,4	MCF-7	breast:
2	chr4:75186018..75191874-chr4:75238287..75242590,7	MCF-7	breast:
3	chr4:75184279..75188446-chr4:75594088..75602141,9	MCF-7	breast:
4	chr4:75182418..75184438-chr4:75184845..75186853,2	K562	blood:
5	chr4:75184788..75188448-chr4:75240732..75243292,5	MCF-7	breast:
6	chr4:75184159..75187825-chr4:75548477..75550130,4	MCF-7	breast:
7	chr4:75184705..75187953-chr4:75546623..75549644,3	MCF-7	breast:
8	chr4:75185909..75186804-chr4:75600613..75601656,4	MCF-7	breast:
9	chr4:75185920..75186462-chr4:75600874..75601511,2	K562	blood:
10	chr4:75185936..75187099-chr4:75596010..75596904,4	K562	blood:
11	chr4:75186062..75186814-chr4:75242150..75242841,2	MCF-7	breast:
12	chr4:75186239..75186830-chr4:75236648..75237330,2	MCF-7	breast:
13	chr4:75186240..75186760-chr4:75596073..75596853,2	MCF-7	breast:
14	chr4:75186151..75186877-chr4:75548272..75548823,2	MCF-7	breast:
15	chr4:75186278..75187949-chr4:75345277..75348029,2	MCF-7	breast:
16	chr4:75186306..75189652-chr4:75595987..75599313,3	K562	blood:
17	chr4:75186354..75188537-chr4:75543552..75545895,3	MCF-7	breast:
18	chr4:75185886..75186591-chr4:75397266..75397966,2	K562	blood:
19	chr4:75181467..75184781-chr4:75184845..75186626,3	K562	blood:
20	chr4:75184855..75186836-chr4:75508740..75510695,2	MCF-7	breast:
21	chr4:75184694..75186462-chr4:75506531..75508249,2	MCF-7	breast:
22	chr1:7427515..7428303-chr4:75186006..75186506,2	MCF-7	breast:
23	chr4:75185456..75188448-chr4:75321032..75323614,2	MCF-7	breast:

No data

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10006685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10011730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10014791	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10015148	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1246576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1246583	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1246589	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1246592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1246593	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1246595	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1246596	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1460004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16850833	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs16850864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16850866	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16850885	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850889	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850903	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2611754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28382340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28423375	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28434222	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28462312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588511	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28663170	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28721942	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28788278	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs492042	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56667969	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs579866	1.00[CEU][hapmap]
rs6821364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs734222	1.00[CEU][hapmap]
rs7656041	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656313	0.90[ASN][1000 genomes]
rs7665228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7670644	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689369	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7697394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683437	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9884653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9992624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9993008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75175600-75186600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:75175600-75189000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:75176800-75186600	Weak transcription	Esophagus	oesophagus
4	chr4:75184600-75187000	Enhancers	Hela-S3	cervix
5	chr4:75185200-75186600	Enhancers	NHDF-Ad	bronchial
6	chr4:75185200-75187600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:75185400-75186600	Enhancers	Fetal Heart	heart
8	chr4:75185400-75187000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:75185400-75187600	Enhancers	HMEC	breast
10	chr4:75185600-75186600	Enhancers	Osteobl	bone
11	chr4:75185800-75186800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:75185800-75186800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:75185800-75187000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:75185800-75188000	Enhancers	Primary hematopoietic stem cells	blood
15	chr4:75186000-75186800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:75186000-75186800	Enhancers	NHLF	lung
17	chr4:75186000-75192000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:75186200-75186600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:75186200-75186600	Enhancers	Brain Hippocampus Middle	brain
20	chr4:75186200-75186800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:75186200-75186800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:75186200-75186800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:75186200-75186800	Enhancers	Fetal Intestine Small	intestine
24	chr4:75186200-75186800	Enhancers	Pancreas	Pancrea
25	chr4:75186200-75186800	Enhancers	NH-A	brain
26	chr4:75186200-75186800	Flanking Active TSS	NHEK	skin
27	chr4:75186200-75187000	Enhancers	Stomach Mucosa	stomach
28	chr4:75186400-75186600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:75186400-75186600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr4:75186400-75186600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:75186400-75186600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
32	chr4:75186400-75186600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:75186400-75186600	Enhancers	Brain Anterior Caudate	brain
34	chr4:75186400-75186600	Enhancers	Brain Cingulate Gyrus	brain
35	chr4:75186400-75186600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr4:75186400-75186600	Flanking Active TSS	K562	blood
37	chr4:75186400-75186800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr4:75186400-75186800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr4:75186400-75186800	Enhancers	H9 Cell Line	embryonic stem cell
40	chr4:75186400-75186800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:75186400-75186800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr4:75186400-75186800	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr4:75186400-75186800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr4:75186400-75186800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:75186400-75186800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:75186400-75186800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:75186400-75186800	Enhancers	Colonic Mucosa	Colon
48	chr4:75186400-75186800	Enhancers	Gastric	stomach
49	chr4:75186400-75186800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr4:75186400-75186800	Enhancers	Rectal Mucosa Donor 31	rectum

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